View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7337_high_31 (Length: 465)
Name: NF7337_high_31
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Original strand, 50374085 - 50374537
Alignment:
| Q |
18 |
atttctaatgttgttttctttatccattattacgtttaccaatgtgtatgggtggtggtttggtttctacttaaaatgaaaaatgattacaggctagacg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
50374085 |
atttctaatgttgttttctttatccattattacgtttaccaatgtgtgtgggtggtggtttggtttgtacttaaaatgaaaaatgattacaggctagacg |
50374184 |
T |
|
| Q |
118 |
ccagaaggggaaataaaacatatttatgcactgagaggagagccacataaagaataaatttgcagagtggtcagtgataggagcaagagtttgaaataga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50374185 |
ccagaaggggaaataaaacatatttatgcactgagaggagagccacataaagaataaatttgcagagtggtcagtgataggagcaagagtttgaaataga |
50374284 |
T |
|
| Q |
218 |
caagtcattgaaagtctaaggtgaattattcaggcgcgtttgggctgtgtctgaaaaactaaagttgctgcggtttac----------ttattatttatg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
50374285 |
caagtcattgaaagtctaaggtgaattattcaggcgcgtttgggctgtgtctaaaaaactaaagttgctgcggtttacttattactatttattatttatg |
50374384 |
T |
|
| Q |
308 |
attgtgacagtgatatctgcaacgaactgacact-aaaaaggacacggtaatcataagttcaatgactaaaacaggatcgaccattgtgatttaactata |
406 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50374385 |
attgtgatagtgatatctgcaacgaactgacactaaaaaaggacacagtaatcataagttcaatgactaaaacaggatcgaccattgtgatttaactata |
50374484 |
T |
|
| Q |
407 |
ttccttacttcttcattgccaatttcgtgacagtggcagcttcttcatctcac |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
50374485 |
ttccttacttcttcattgccaatttcgtgacagtggcagcttcttcatgtcac |
50374537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University