View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7337_high_34 (Length: 454)

Name: NF7337_high_34
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7337_high_34
NF7337_high_34
[»] chr5 (14 HSPs)
chr5 (1-443)||(3299765-3300215)
chr5 (1-443)||(3392658-3393108)
chr5 (2-228)||(1163333-1163562)
chr5 (32-133)||(1850192-1850293)
chr5 (260-379)||(1163164-1163288)
chr5 (88-228)||(40418614-40418758)
chr5 (224-314)||(1850346-1850444)
chr5 (88-228)||(38988036-38988180)
chr5 (88-228)||(39880151-39880297)
chr5 (371-420)||(39880491-39880540)
chr5 (88-228)||(39726755-39726906)
chr5 (226-307)||(39880327-39880405)
chr5 (226-307)||(40418782-40418860)
chr5 (254-307)||(38988229-38988282)
[»] chr4 (4 HSPs)
chr4 (84-228)||(44444395-44444543)
chr4 (88-183)||(25911951-25912046)
chr4 (372-413)||(25911657-25911698)
chr4 (271-307)||(25911785-25911821)


Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 3299765 - 3300215
Alignment:
Q  1 actaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299765 actaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatc 3299864  T
Q  101 cattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299865 cattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatg 3299964  T
Q  201 cttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299965 cttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttat 3300064  T
Q  301 gtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagta--------catttcacctcacccttccatt 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||| ||||    
T  3300065 gtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtacctttcaccatttcacctcaccctttcatt 3300164  T
Q  393 tactttcctgtcttccatgtgttgcactcaaacatggctagttttacttct 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300165 tactttcctgtcttccatgtgttgcactcaaacatggctagttttacttct 3300215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 3392658 - 3393108
Alignment:
Q  1 actaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392658 actaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatc 3392757  T
Q  101 cattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392758 cattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatg 3392857  T
Q  201 cttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392858 cttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttat 3392957  T
Q  301 gtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagta--------catttcacctcacccttccatt 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||| ||||    
T  3392958 gtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtacctttcaccatttcacctcaccctttcatt 3393057  T
Q  393 tactttcctgtcttccatgtgttgcactcaaacatggctagttttacttct 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3393058 tactttcctgtcttccatgtgttgcactcaaacatggctagttttacttct 3393108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 1163562 - 1163333
Alignment:
Q  2 ctaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatcc 101  Q
    |||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| || | ||  | ||| ||||||||||   |||||||||| |||    
T  1163562 ctaaactcctcttcgaccaaagagcaatctaccgaaatccaacctactgccatccatctggcccactcttcagatcccccttttatagacctttttttcc 1163463  T
Q  102 attggaggatttgcttgatggatgat---ccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaaga 198  Q
    ||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1163462 attggaggatttgcttgatggatgatgatctacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacaaaaacaaggaaga 1163363  T
Q  199 tgcttttcatttattagcttttttctattt 228  Q
    |||||||||||||||||||||||| |||||    
T  1163362 tgcttttcatttattagcttttttatattt 1163333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 1850192 - 1850293
Alignment:
Q  32 accgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccac 131  Q
    ||||||||| ||||||||||||||||| || | || |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1850192 accgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggatgatctac 1850291  T
Q  132 tt 133  Q
    ||    
T  1850292 tt 1850293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 260 - 379
Target Start/End: Complemental strand, 1163288 - 1163164
Alignment:
Q  260 acttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgt---------gtgcttcccaaaccatgcatgtcattaat 350  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||| ||||    ||    
T  1163288 acttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtc----at 1163193  T
Q  351 tatattcggcatataaagtacatttcacc 379  Q
    ||||||||||||||||||| | |||||||    
T  1163192 tatattcggcatataaagttcctttcacc 1163164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 40418614 - 40418758
Alignment:
Q  88 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataac--c 185  Q
    |||||||||  |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | || ||||||||||  ||||||||||  |    
T  40418614 agaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttaatgttttgtttgttccaataacaac 40418713  T
Q  186 aaaa--caaggaagatgcttttcatttattagcttttttctattt 228  Q
    ||||  |||||||||||||||||||||||||| || |||||||||    
T  40418714 aaaaatcaaggaagatgcttttcatttattaggttctttctattt 40418758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 224 - 314
Target Start/End: Original strand, 1850346 - 1850444
Alignment:
Q  224 tatttattccgataacaagaacaacta--------gttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaa 314  Q
    |||||||||||||||||||||||| ||        |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  1850346 tatttattccgataacaagaacaaatacttaaaaggttcttttcacttactttgttgcaatttacaatttctgtttgatatttatgtttattagaacaa 1850444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 38988036 - 38988180
Alignment:
Q  88 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacca- 186  Q
    ||||||||| ||||||||||||| |||||||| |||||||| | | || |||||||||||| ||||||| | |||||||||||||  |||||||||| |     
T  38988036 agaccttttgatccattggaggacttgcttgacggatgatctagtcactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataacaac 38988135  T
Q  187 ---aaacaaggaagatgcttttcatttattagcttttttctattt 228  Q
       || |||||||| |||| |||||||||||| || |||||||||    
T  38988136 aacaatcaaggaagctgctcttcatttattaggttctttctattt 38988180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 39880151 - 39880297
Alignment:
Q  88 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacca- 186  Q
    |||||||||| |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | |||||||||| ||  |||||||||  |     
T  39880151 agacctttttttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttgatgtttt-tttgttccaataataac 39880249  T
Q  187 ------aaacaaggaagatgcttttcatttattagcttttttctattt 228  Q
          || |||||||||||||||||||||||||| || |||||||||    
T  39880250 aacaacaatcaaggaagatgcttttcatttattaggttctttctattt 39880297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 39880491 - 39880540
Alignment:
Q  371 catttcacctcacccttccatttactttcctgtcttccatgtgttgcact 420  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  39880491 catttcacctcaccctaccatttactttcctgtcttccatatgttgcact 39880540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 39726755 - 39726906
Alignment:
Q  88 agacctttttatccattggaggatttgcttgatggatgatccac----ttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa 183  Q
    ||||||||| ||||||||||||| |||||||| |||||||| |     |||| |||||||||||| ||||| | | |||||||||||||  |||||||||    
T  39726755 agaccttttgatccattggaggacttgcttgacggatgatctagctagttactagcttaaacaaaaatcacctttgttgatgttttgtttgttccaataa 39726854  T
Q  184 ccaaaacaa-------ggaagatgcttttcatttattagcttttttctattt 228  Q
      | |||||       ||||||||||||||||||||||| || |||||||||    
T  39726855 taacaacaacaatcaaggaagatgcttttcatttattaggttctttctattt 39726906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 307
Target Start/End: Original strand, 39880327 - 39880405
Alignment:
Q  226 tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt 307  Q
    |||||||| || ||||||||||   || |||||||||||   || |||| ||||||||||||||||||||||||||||||||    
T  39880327 tttattccaatgacaagaacaa---gtgcttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt 39880405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 307
Target Start/End: Original strand, 40418782 - 40418860
Alignment:
Q  226 tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt 307  Q
    |||||||| || ||||||||||   || |||||||||||   || |||| ||||||||||||||||||||||||||||||||    
T  40418782 tttattccaatgacaagaacaa---gtgcttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt 40418860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 38988229 - 38988282
Alignment:
Q  254 cttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt 307  Q
    |||||||||||   || |||| ||||||||||||||||||||||||||||||||    
T  38988229 cttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt 38988282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 44444543 - 44444395
Alignment:
Q  84 tagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa 183  Q
    ||||||| |||||  |||||| ||||| |||||||| |||||||| | ||||||||||||||||| ||||||| | |||||||||||||   ||||||||    
T  44444543 tagaagatcttttgttccattagaggacttgcttgacggatgatctagttacaagcttaaacaaaaatcacttttgttgatgttttgtttactccaataa 44444444  T
Q  184 ccaaaa----caaggaagatgcttttcatttattagcttttttctattt 228  Q
    | ||||    ||||||| |||| ||||||||||||| || |||||||||    
T  44444443 cgaaaacaatcaaggaatatgcctttcatttattaggttatttctattt 44444395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 25912046 - 25911951
Alignment:
Q  88 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa 183  Q
    |||||||||  |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | |||||||||||||  |||||||||    
T  25912046 agaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataa 25911951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 413
Target Start/End: Complemental strand, 25911698 - 25911657
Alignment:
Q  372 atttcacctcacccttccatttactttcctgtcttccatgtg 413  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  25911698 atttcacctcaccctaccatttactttcctgtcttccatgtg 25911657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 25911821 - 25911785
Alignment:
Q  271 tgcaatttgcaatttctgtttgatatttatgtttatt 307  Q
    |||| |||||||||||||||||||| |||||||||||    
T  25911821 tgcagtttgcaatttctgtttgatacttatgtttatt 25911785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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