View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_high_39 (Length: 426)
Name: NF7337_high_39
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 43114457 - 43114196
Alignment:
| Q |
1 |
accttaattgcacctttttctaaaaacccttttgatctaatcnnnnnnnggttacacccttttgatctaatctaagttgataaaagtcttatatgttatt |
100 |
Q |
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| T |
43114457 |
accttaattgcacctttttctaaaaacccttttgatctaatctttttttggttacacccttttgatctaatctaagttgataaaagtcttatatgttatt |
43114358 |
T |
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| Q |
101 |
attaacatcatcattaactattttcatttgtttctctttacataattaattacattttgtgcaggtcacaaactaattagtagtctttttgccatttatt |
200 |
Q |
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| T |
43114357 |
attaacatcatcattaactattttcatttgtttctctttacacaattaattacattttgtgcaggtcacaaactaattagtagtctttttgccatttatt |
43114258 |
T |
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| Q |
201 |
atggggtgtgaaagcaaagcttgtaatcaaatgttttcttatgatttttgcatattcaagag |
262 |
Q |
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| T |
43114257 |
atggggtgtgaaagcaaagcttgtaatcaaatgttttcttatgatttttgcatattcaagag |
43114196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 360 - 409
Target Start/End: Complemental strand, 43114098 - 43114049
Alignment:
| Q |
360 |
ctctacacatctatggtaatagttttttctacttttctctatattattat |
409 |
Q |
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| T |
43114098 |
ctctacacatctatggtaatagttttttctacttttctctatattattat |
43114049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 43467144 - 43467206
Alignment:
| Q |
113 |
attaactattttcatttgtttctctttacataattaattacattttgtgcaggtcacaaactaat |
177 |
Q |
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||||||||||| |||||||||||||| | |||||||||||||||| |||||||||||||||| |
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| T |
43467144 |
attaactatttgcatttgtttctcttgaag--attaattacattttgtccaggtcacaaactaat |
43467206 |
T |
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