View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7337_high_4 (Length: 773)
Name: NF7337_high_4
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 67 - 758
Target Start/End: Original strand, 35225202 - 35225891
Alignment:
| Q |
67 |
gcagtcccaaacagacctgcagcagaaccgcaagaatagggtgattcaaagagcagatttgaagagatatttgtgagattcgtcgttggctgagttattt |
166 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35225202 |
gcagccccaaacagacctgcagcagaaccgcaagaatagggtgattcaaagagcaaatttgaagagatatttgtgagattcgtctttggctgagttattt |
35225301 |
T |
|
| Q |
167 |
aggtaaacatgtgctgcttttcttcaatgcatttaaacctttaataattttgtgttttgtttggtgattatggtattgattttgaaatgtagtattggat |
266 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35225302 |
aggtaaacatgtgctgcttttcttcaatgcatttaaacctttaataattttgtgttttgtttggtgattatggtattgattttgaaatgtagtattggat |
35225401 |
T |
|
| Q |
267 |
ccactaaacctttgattgttatatctgtgattttttccttctttcgattgagagaatccaatttgtttgattttgaatattaggaggtaggttttgtaag |
366 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35225402 |
ccactaaacctttggttgttatatctgtgattttttccttctttcaattgagagaatccaatttgtttgattttgaatattaggaggtaggttttgtaag |
35225501 |
T |
|
| Q |
367 |
aaattttatcatcagaaagatcatatannnnnnnnattttgtcatagaatcaatgatagggcctactcgattttcggcagaacgacaaaggtgtataatg |
466 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35225502 |
aaattttatcatcagaaagatcatat-ttttttttattttgtcatagaatcaatgatagggcctactcgattttcggcagaacgacaaaggtgtataatg |
35225600 |
T |
|
| Q |
467 |
ctctaattgcaagattgcaagataagagtgccgatgtgtatctactaaagccactccaactaataagttagagatgacaccagttgcaagtccttaactc |
566 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35225601 |
ctctaattgcaagattgcaagataagactgccgacgtgtatctactaaagccactccaactaataagttagagatgacaccagttgcaagtccttaactc |
35225700 |
T |
|
| Q |
567 |
ggaattttagatcttttnnnnnnnttaaaatcggtttgctttctgcactgtccgatcttgatccaacggtcacccatgttttgactacatgaacgtgtgt |
666 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35225701 |
ggtattttagatcttttaaaaaaattaaaatcggtttgctttctgcact-tccgatcttgatccaacggtcacccatgttttgactacatgaacgtgtgt |
35225799 |
T |
|
| Q |
667 |
gattgtgactgcaggccatccaaaactgttttctcattctttaacttgatagttacacaacttgtttcctctagttggtaccaagctgatgt |
758 |
Q |
| |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35225800 |
gattgtgactgcaggccatctaaaaccgttttctcattctttaacttgatagttacacaacttgtttcctctagttggtaccaagctgatgt |
35225891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 99 - 391
Target Start/End: Original strand, 8712492 - 8712786
Alignment:
| Q |
99 |
agaatagggtgattcaaagagcagatttgaagagatatttgtgagattcgtcgttggctgagttatttaggtaaacatgtgctgcttttcttcaatgcat |
198 |
Q |
| |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
8712492 |
agaatagggtgattcaaagagcaaacttgaagagatatttgtgagattcgtcggtggctgagttatttaggtaaacatgtgttgcttttcttcaataaat |
8712591 |
T |
|
| Q |
199 |
ttaaacctttaataattttgtgttttgtttggtgattatggtattgattttgaaatgtagtattggatccactaaacctttgattgttatatctgtgatt |
298 |
Q |
| |
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| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
8712592 |
taaaacctttaattcttttgtgttttgtttggtgattatcgtattgattttgaaatgtcgtattggatccactaaacctttggttgttatatctgtgatt |
8712691 |
T |
|
| Q |
299 |
t--tttccttctttcgattgagagaatccaatttgtttgattttgaatattaggaggtaggttttgtaagaaattttatcatcagaaagatcata |
391 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8712692 |
ttatttccttctttcgattgagagaatccaatttgtttgattttgaatattaggaggtaggttttgtaagaaattttatcatcagaaagatcata |
8712786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 99 - 368
Target Start/End: Complemental strand, 8713065 - 8712793
Alignment:
| Q |
99 |
agaatagggtgattcaaagagcagatttgaagagatatttgtgagattcgtcgttggctgagttatttaggtaaacatgtgctgcttttcttcaatgcat |
198 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
8713065 |
agaatggggcgattcaaagagcagatttgaagagatatttgtgagattcgtcgttggctgagttatttaggtaaacatgtacttcttttcttcaatgcat |
8712966 |
T |
|
| Q |
199 |
ttaaacctttaataattttgtgttttgtttggtgattatggtattgattttgaaatgtagtattggatccactaaacctttgattgttatatctgtgatt |
298 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||| |
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| T |
8712965 |
ttaaacctttaatacttttgtgttttgtttggtgattatgatattgattttgaaatgtagtattggatccactgaacctttggtagttatatctgtgatt |
8712866 |
T |
|
| Q |
299 |
---ttttccttctttcgattgagagaatccaatttgtttgattttgaatattaggaggtaggttttgtaagaa |
368 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8712865 |
tttttttccttctatcgatagagagaatccaatttgtttgattttgaatattaggaggtaggttttgtaagaa |
8712793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 99 - 391
Target Start/End: Original strand, 8669715 - 8670007
Alignment:
| Q |
99 |
agaatagggtgattcaaagagcagatttgaagagatatttgtgagattcgtcgttggctgagttatttaggtaaacatgtgctgcttttcttcaatgcat |
198 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
8669715 |
agaatagggcgattcaaagagaagatttaaagagatatttgtgagatttgccgttggctgaattatttaggtaaacatgtgttgcttttcttcaatgcac |
8669814 |
T |
|
| Q |
199 |
ttaaacctttaataattttgtgttttgtttggtgattatggtattgattttgaaatgtagtattggatccactaaacctttgattgttatatctgtga-t |
297 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||| ||| | |
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|
| T |
8669815 |
ttaaacctttaatacttttgtgttttgtttagtgattatggtattgattttgtaatgtagtattggatccact-aatctttggttgttatatctttgatt |
8669913 |
T |
|
| Q |
298 |
tttttccttctttcgattgagagaatccaatttgtttgattttgaatattaggaggtaggttttgtaagaaattttatcatcagaaagatcata |
391 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
8669914 |
tttttccttcgttcgattgagagaatccaatttgtttgattttgaatattaggaggtaggttttggaagaaattttatcatcagaaagatcata |
8670007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 99 - 368
Target Start/End: Complemental strand, 8670286 - 8670014
Alignment:
| Q |
99 |
agaatagggtgattcaaagagcagatttgaagagatatttgtgagattcgtcgttggctgagttatttaggtaaacatgtgctgcttttcttcaatgcat |
198 |
Q |
| |
|
||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
8670286 |
agaatagggcgattaaaagagtagatttgaagagatatttgtgagattcgtcgttggttgagttatttagctaaacatgtgctgcctttcttcaatgcat |
8670187 |
T |
|
| Q |
199 |
ttaaacctttaataattttgtgttttgtttggtgattatggtattgattttgaaatgtagtattggatccactaaacctttgattgttatatctgtg--- |
295 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
8670186 |
ttaaacctttaatacttttgtgttttgtttggtgattatgttattgattttgaaatgtagtattggatccactaaagctttcgttgttatatctgtgaac |
8670087 |
T |
|
| Q |
296 |
--attttttccttctttcgattgagagaatccaatttgtttgattttgaatattaggaggtaggttttgtaagaa |
368 |
Q |
| |
|
| ||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
8670086 |
ttaatttttccttctttcgat--agagagtccaaattgtttgattttgaatattaagaggtaggttttgcaagaa |
8670014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 99 - 391
Target Start/End: Complemental strand, 23446437 - 23446145
Alignment:
| Q |
99 |
agaatagggtgattcaaa-gagcagatttg--aagagatatttgtgagattcgtcgttggctgagttatttaggtaaacatgtgctgcttttcttcaatg |
195 |
Q |
| |
|
||||||||| |||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
23446437 |
agaatagggcgattcaaaagagcagacttgtgaagagatatttgtgagattcgtcgttggcttagttatttaggtaaacatgtgctacttttcttcaatg |
23446338 |
T |
|
| Q |
196 |
catttaaacctttaataattttgtgttttgtttggtgattatggtattgattttgaaatgtagtattggatccactaaacctttgattgttatatctgtg |
295 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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|
| T |
23446337 |
catttaaacctttaatacttttgtgttttgtttggtgattatggtattgattttgaaatgtagtattggatccactaaacctttgtttgtt-----tgta |
23446243 |
T |
|
| Q |
296 |
a--ttttttccttctttcgattgagagaatccaatttgtttgattttgaatattaggaggtaggttttgtaagaaattttatcatcagaaagatcata |
391 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23446242 |
attttttttccttctttcgattgagagaatccaagttgtttgattttgaatattaggaggtaggttttgtaagaaattttatcatcagaaagatcata |
23446145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 99 - 368
Target Start/End: Original strand, 23445867 - 23446138
Alignment:
| Q |
99 |
agaatagggtgattcaaagagcagatttgaagagatatttgtgagattcgtcgttggctgagttatttaggtaaacatgtgctgcttttcttcaatgcat |
198 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23445867 |
agaatggggcgattcaaagagcagatttgaagagatgtttgtgagattcgccgttggctgagttatttaggaaaacatgtgctgcttttcttcaatgcat |
23445966 |
T |
|
| Q |
199 |
ttaaacctttaataattttgtgttttgtttggtgattatggtattgattttgaaatgtagtattggatccactaaacctttgattgttatatctgtgatt |
298 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||| |
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|
| T |
23445967 |
ttaaacc-ttaatacttttgtgttttgtttggtgattatggtattgattttgaaatttagtattggatccactaaaccattggttgttatatctgtgatt |
23446065 |
T |
|
| Q |
299 |
ttt---tccttctttcgattgagagaatccaatttgtttgattttgaatattaggaggtaggttttgtaagaa |
368 |
Q |
| |
|
||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23446066 |
tttttatttttatttcgattgagagaatccaatttgtttgattttgaatattaggaggtaggttttgtaagaa |
23446138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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