View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_high_40 (Length: 425)
Name: NF7337_high_40
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 15 - 410
Target Start/End: Complemental strand, 3217558 - 3217163
Alignment:
| Q |
15 |
tatataataagcacccgttttcatgnnnnnnncaccatccacacaaattaacatgaacataaacaagatggaactcactccaatcttgcttcttggtttc |
114 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217558 |
tatataataagcacccgttttcatgtttttttcaccatccacacaaattaacatgaacataaacaagatggaactcactccaatcttgcttcttggtttc |
3217459 |
T |
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| Q |
115 |
attctcctgctaagcatatgtcaaacttcagcaaataaataccaaaaattagcagctgcaaatgaaggactagaagatcaaagtagcttgttgacttaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217458 |
attctcctgctaagcatatgtcaaacttcagcaaataaataccaaaaattagcagctgcaaatgaaggactagaagatcaaagtagcttgttgacttaca |
3217359 |
T |
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| Q |
215 |
ttgttcacgttgaaaagccttctcttcaatctaaggagagtttggatggctggtacaattcactcttgccagcagccacgataaaaactcaaaaccagca |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3217358 |
ttgttcacgttgaaaagccttctcttcaatctaaggagagtttggatggctggtacaattcactcttgccagcagccaccataaaaactcaaaaccagca |
3217259 |
T |
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| Q |
315 |
acgcgtaattttctcataccaaaacgtcatgaatggattcgccgtgaaattgaccccagaagaagccaaggctctagaagagaaggaggaggttct |
410 |
Q |
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| T |
3217258 |
acgcgtaattttctcataccaaaacgtcatgaatggattcgccgtgaaattgaccccagaagaagccaaggctctagaagagaaggaggaggttct |
3217163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 64 - 410
Target Start/End: Complemental strand, 3209561 - 3209215
Alignment:
| Q |
64 |
aacatgaacataaacaagatggaactcactccaatcttgcttcttggtttcattctcctgctaagcatatgtcaaacttcagcaaataaataccaaaaat |
163 |
Q |
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| T |
3209561 |
aacatgaccttaaccaagatggaactaactccaatattgcttattggtttcattcttgtgctaagtatctatacaacttcagcacataaataccaagaat |
3209462 |
T |
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| Q |
164 |
tagcagctgcaaatgaaggactagaagatcaaagtagcttgttgacttacattgttcacgttgaaaagccttctcttcaatctaaggagagtttggatgg |
263 |
Q |
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| || || |||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| |
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| T |
3209461 |
tcacaactacaaatgaaggactagaagatgaaagtagcttattgacttacattgttcacgtcaaaaagccttcacttcaatctaaggagagtttgcatgg |
3209362 |
T |
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| Q |
264 |
ctggtacaattcactcttgccagcagccacgataaaaactcaaaaccagcaacgcgtaattttctcataccaaaacgtcatgaatggattcgccgtgaaa |
363 |
Q |
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| T |
3209361 |
ttggtaccattcactcttgccggaaaccgctacaaaaactcaaaaccagcagcgtattattttctcataccgaaacattgtagatggattcgccgtgaaa |
3209262 |
T |
|
| Q |
364 |
ttgaccccagaagaagccaaggctctagaagagaaggaggaggttct |
410 |
Q |
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|||||||| || ||||||||||||||||||||||| ||||||||||| |
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| T |
3209261 |
ttgaccccggaggaagccaaggctctagaagagaatgaggaggttct |
3209215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 64 - 410
Target Start/End: Complemental strand, 3203587 - 3203241
Alignment:
| Q |
64 |
aacatgaacataaacaagatggaactcactccaatcttgcttcttggtttcattctcctgctaagcatatgtcaaacttcagcaaataaataccaaaaat |
163 |
Q |
| |
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||||||| | ||| |||||||||||| |||||||| |||||| ||||||||||||| ||||||| || | | |||||||||| ||||||||||| ||| |
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| T |
3203587 |
aacatgaccttaaccaagatggaactaactccaatattgcttattggtttcattcttgtgctaagtatctatacaacttcagcacataaataccaagaat |
3203488 |
T |
|
| Q |
164 |
tagcagctgcaaatgaaggactagaagatcaaagtagcttgttgacttacattgttcacgttgaaaagccttctcttcaatctaaggagagtttggatgg |
263 |
Q |
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| ||||| |||||||||||||||||||| |||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||||||| |||| |
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| T |
3203487 |
tcacagctacaaatgaaggactagaagatgaaagtagcttattgacttacattgttcatgtcaataagccttctcttcaatctaaggagagtttgcatgg |
3203388 |
T |
|
| Q |
264 |
ctggtacaattcactcttgccagcagccacgataaaaactcaaaaccagcaacgcgtaattttctcataccaaaacgtcatgaatggattcgccgtgaaa |
363 |
Q |
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|||||| |||||||||||||| |||||| | | |||||||||||||||| || | |||||||||||| |||| | || |||||| ||||||||| |
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| T |
3203387 |
ttggtaccattcactcttgccacaagccactacagaaactcaaaaccagcagcgtattattttctcatacagaaacattgtggctggatttgccgtgaaa |
3203288 |
T |
|
| Q |
364 |
ttgaccccagaagaagccaaggctctagaagagaaggaggaggttct |
410 |
Q |
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|||||||| ||||||||||||| |||||||||||| ||||||||||| |
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| T |
3203287 |
ttgaccccggaagaagccaaggttctagaagagaatgaggaggttct |
3203241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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