View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_high_43 (Length: 416)
Name: NF7337_high_43
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_43 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 43343333 - 43342912
Alignment:
| Q |
1 |
tcaccatgaattctccatttggaataagttgttgagttccatacctagtaattcattataatcaaattagataaactgtttgaataaaacatctgatcaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43343333 |
tcaccatgaattctccatttggaagaagttgttgagttccatacctattaattcattataatcaaattagatcaactgtttgaataaaacatctgatcaa |
43343234 |
T |
|
| Q |
101 |
ttaagcttttattatataaattatttctataagcgtttcaaaaaagtcataatttactttcataagctgtccttaaaagtttatggtaaaaatattttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43343233 |
ttaagcttttattatataaattatttctataagcgtttcatataagtcataatttactttcataagctgtccttaaaagtttatggtaaaaatattttat |
43343134 |
T |
|
| Q |
201 |
gtacatgccatgaaccatttctataagttcttct-------------aaagcacttttgtttcaaatggcatatatattaagagaaaatatatcacaaat |
287 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43343133 |
gtacatgccatgaaccatttctataagttcttctaaacagtaattcaaaagcacttttgtttcaaatggcatatatattaagagaaaatatatcacaaat |
43343034 |
T |
|
| Q |
288 |
ttcatagttgagttgcataccatctattttcagacaatgtcccgtcatattctctccattcacagttttggcaaccgccaccatagtatctgattgattt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43343033 |
ttcatagttgagttgcataccatctattttcagacaatgtcccgtcatattctctccattcacagttttggcaaccgccaccatagtatctgattgattt |
43342934 |
T |
|
| Q |
388 |
ttccccctccatgaaaccacca |
409 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
43342933 |
ttccccctccatgaaaccacca |
43342912 |
T |
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