View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_high_50 (Length: 358)
Name: NF7337_high_50
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_50 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 12225196 - 12224869
Alignment:
| Q |
18 |
acaatttcatcaatttctcttcaattgtttcaatttctcgtcaatttatcgttattttgttgtaggaatcggcgatcgcgagtattaaagaatggcttgc |
117 |
Q |
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| T |
12225196 |
acaatttcatcaatttctcttcaattgtttcaatttatcgtcaatttatcgttattttgttgtaggaatcggcgatcgcgagtattaaagaatggcttgc |
12225097 |
T |
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| Q |
118 |
ggatcctgcgattgggaacaatgctacgttgaggcttgttgctgggattannnnnnngcatgaacaggatttcaatgaggcgttgaagtatactaatgct |
217 |
Q |
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| T |
12225096 |
ggatcctgcgattgggaacaatgctacgttgaggcttgttgctgggattatttttttgcatgaacaggatttcaatgaggcgttgaagtatactaatgcc |
12224997 |
T |
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| Q |
218 |
ggtggaaccatggaactgtaagaaaaaatgcannnnnnnatacactgacggtgtaaaaataatattacactgtcatcccataaatagatacagtttaatg |
317 |
Q |
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| T |
12224996 |
ggtggaaccatggaactgtaagaaaaaatgca-ttttttatacactgacggtgtaaaaataatattacactgtcatcccataaatagatacagtttaatg |
12224898 |
T |
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| Q |
318 |
ggaatacactgacgatgtaaaatgatatt |
346 |
Q |
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| T |
12224897 |
ggaatacactgacgatgtaaaatgatatt |
12224869 |
T |
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