View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_high_52 (Length: 348)
Name: NF7337_high_52
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 18541316 - 18541625
Alignment:
| Q |
17 |
gtagcaatcatcaaaatgatgaaggtattgaagaccaagttatagaagttaagacattagagatagatgtagatggttccaaagagttatttgagaccaa |
116 |
Q |
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|||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18541316 |
gtagcaatcatcaaaatgatgaaggtattggagagcaggttatagaagttaagacattagagatagatgtagatggttccaaagagttatttgagaccaa |
18541415 |
T |
|
| Q |
117 |
gttgaatgaagaaagaggagaagctgaggcaaggttttttcagaagcttgatgaagagcttaacaaggttaatgccttttataaggaacaggtggaggca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18541416 |
gttgaatgaagaaagaggagaagctgaggcaaggttccttcagaagcttgatgaagagcttaacaaggttaatgccttttataaggaacaggtggaggca |
18541515 |
T |
|
| Q |
217 |
gttaagcatgaagcaacacttttgagtaaacaagttgagactctagttgcattgagggtaaaggttaaaaaccttgatccaggtaaatgcaaaatatgtt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18541516 |
gttaagcatgaagcaacacttttgagtaaacaagttgagactctagttgcattaagggtaaaggttaaaaaccttgatccaggtaaatgcaaaatatgtt |
18541615 |
T |
|
| Q |
317 |
tttacacgta |
326 |
Q |
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|||||||||| |
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| T |
18541616 |
tttacacgta |
18541625 |
T |
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