View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_high_65 (Length: 277)
Name: NF7337_high_65
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_65 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 31875949 - 31876197
Alignment:
| Q |
13 |
aatattgcaaacattgtatatatgtttacattaggtttttgaagaattaatgtgtttcagcattaccttggtagattcatgagcaaaatatgtttgacca |
112 |
Q |
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| T |
31875949 |
aatattgcaaacattgtatatatatttacattaggtttttgaagaattaatgtgtttcagcattaccttggtagactcatgagcaaaatatgtttgacca |
31876048 |
T |
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| Q |
113 |
agcatcacatataagtagccaacagaatgataaaatttggactcgtcggggtattttgtttttcaatacctttgtttgtgaaaatgttgaatacatgata |
212 |
Q |
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| T |
31876049 |
agcatcacatataagtagccaacagaatgataaaatttggactcgtcggggtattttgtttttcaatacctttgtttgtgaaaatgtcgaatacatgata |
31876148 |
T |
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| Q |
213 |
ctaatcaaagggtaatgcagactcagaaatcatttccatatatactaac |
261 |
Q |
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| T |
31876149 |
ctaatcaaagggtaatgcagactcagaaatcatttccataaatactaac |
31876197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 31584271 - 31584363
Alignment:
| Q |
32 |
atatgtttacattaggtttttgaagaattaatgtgtttcagcattaccttggtagattcatgagcaaaatatgtttgaccaagcatcacatat |
124 |
Q |
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| T |
31584271 |
atatatttacattaggattttgatgaattaatgtgtttcagcattaccttggcggattcatgcgcaaagtatttttgcctaagcatcacatat |
31584363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 31550491 - 31550406
Alignment:
| Q |
39 |
tacattaggtttttgaagaattaatgtgtttcagcattaccttggtagattcatgagcaaaatatgtttgaccaagcatcacatat |
124 |
Q |
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| T |
31550491 |
tacattaggattttgaagagttaacgtgttttggcattaccttggcagactcatgagcaaagtgtttttgcctaagcatcgcatat |
31550406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 18229882 - 18229798
Alignment:
| Q |
164 |
tattttgtttttcaatacctttgtttgtgaaaatgttgaatacatgatactaatc-aaagggtaatgcagactcagaaatcattt |
247 |
Q |
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| T |
18229882 |
tattttgttattcaatagctttgtttgtgaaaaggtcaaatgcaaaatactaatcaaaagggtaagacaaactcagaaatcattt |
18229798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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