View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7337_high_66 (Length: 276)

Name: NF7337_high_66
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7337_high_66
NF7337_high_66
[»] chr6 (5 HSPs)
chr6 (19-268)||(35211918-35212167)
chr6 (184-257)||(14658733-14658806)
chr6 (186-265)||(8424701-8424780)
chr6 (186-264)||(24971128-24971202)
chr6 (186-257)||(14665406-14665477)
[»] chr4 (7 HSPs)
chr4 (186-268)||(37483098-37483180)
chr4 (186-262)||(1442214-1442290)
chr4 (195-266)||(7423552-7423623)
chr4 (188-226)||(25602931-25602969)
chr4 (186-251)||(40930542-40930607)
chr4 (186-239)||(47484274-47484326)
chr4 (194-242)||(13253323-13253371)
[»] chr3 (3 HSPs)
chr3 (186-265)||(46288416-46288495)
chr3 (186-271)||(35282836-35282921)
chr3 (194-266)||(5404620-5404692)
[»] chr2 (4 HSPs)
chr2 (184-266)||(22151686-22151768)
chr2 (200-259)||(33987757-33987816)
chr2 (213-266)||(846342-846395)
chr2 (187-254)||(31277276-31277343)
[»] chr7 (3 HSPs)
chr7 (186-259)||(30036908-30036981)
chr7 (211-266)||(37615405-37615460)
chr7 (186-254)||(27667188-27667256)
[»] chr8 (5 HSPs)
chr8 (208-266)||(24840346-24840404)
chr8 (202-259)||(7200995-7201052)
chr8 (185-265)||(12973872-12973952)
chr8 (208-268)||(21665736-21665796)
chr8 (185-265)||(39758640-39758720)


Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 35212167 - 35211918
Alignment:
Q  19 ctaagaacactctgactaaagaagaggccaagatattagatatagctattctcgtaatacaatgccaaagaatatagtactgcgtaaattagtggttgcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35212167 ctaagaacactctgactaaagaagaggccaagatattagatatagctattctcgtaatacaatgccaaagaatatagtactgcgtaaattagtggttgcc 35212068  T
Q  119 tgaaaataataattttaacgggcaattgagtaacaaaccatattggactagcatagtgatggatagaacttgggaattatggggtgccaaagtcccacat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35212067 tgaaaataataattttaacgggcaattgagtaacaaaccatattggactagcatagtgatggatagaacttgggaattatggggtgccaaagtcccacat 35211968  T
Q  219 cgagtagtatgggacgctcggtggaatatttaagtggcttgtttcttctc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35211967 cgagtagtatgggacgctcggtggaatatttaagtggcttgtttcttctc 35211918  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 14658806 - 14658733
Alignment:
Q  184 gaacttgggaattatggggtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaagtggct 257  Q
    ||||||||| ||||||||||| | |||| |||||||||||||||||||| |||| || || |||||||||||||    
T  14658806 gaacttgggtattatggggtgtcgaagttccacatcgagtagtatgggatgctcagttgagtatttaagtggct 14658733  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 8424701 - 8424780
Alignment:
Q  186 acttgggaattatggggtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaagtggcttgtttctt 265  Q
    ||||||| ||||||| ||||  |||||||||||| |||||||||||| | |||||||| ||||||||||| ||| |||||    
T  8424701 acttgggtattatggagtgcttaagtcccacatcaagtagtatgggatgttcggtggagtatttaagtggtttgattctt 8424780  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 24971202 - 24971128
Alignment:
Q  186 acttgggaattatggggtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaagtggcttgtttct 264  Q
    ||||||| |||||||||||    ||||||| |||||||||||||||| ||| |||||| ||||||||||| ||| ||||    
T  24971202 acttgggtattatggggtg----agtcccatatcgagtagtatgggatgcttggtggagtatttaagtggtttggttct 24971128  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 14665477 - 14665406
Alignment:
Q  186 acttgggaattatggggtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaagtggct 257  Q
    ||||||| |||||| || ||| ||| ||||||||||||||||| |||   ||| ||||||||||||||||||    
T  14665477 acttgggtattatgaggcgcccaagccccacatcgagtagtattggattgtcgatggaatatttaagtggct 14665406  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 37483098 - 37483180
Alignment:
Q  186 acttgggaattatggggtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaagtggcttgtttcttctc 268  Q
    ||||||| ||||||||||||| |||| ||||||| |||||||||||| | | |||||| ||||||||||||||| ||||||||    
T  37483098 acttgggtattatggggtgcccaagttccacatcaagtagtatgggatgtttggtggagtatttaagtggcttggttcttctc 37483180  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 1442290 - 1442214
Alignment:
Q  186 acttgggaattatggggtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaagtggcttgttt 262  Q
    ||||||| | ||||||||||| |||| |||||||||||||||||||| |||| ||||| ||||||| ||| ||||||    
T  1442290 acttgggtagtatggggtgcccaagtaccacatcgagtagtatgggatgctcagtggattatttaattggtttgttt 1442214  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 7423552 - 7423623
Alignment:
Q  195 ttatggggtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaagtggcttgtttcttc 266  Q
    |||||||||||| || ||| |||||||||||||||||| |||| || || ||||||||| ||||| ||||||    
T  7423552 ttatggggtgcccaaatccaacatcgagtagtatgggatgctctgtagagtatttaagtagcttgattcttc 7423623  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 25602931 - 25602969
Alignment:
Q  188 ttgggaattatggggtgccaaagtcccacatcgagtagt 226  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  25602931 ttgggtattatggggtgcccaagtcccacatcgagtagt 25602969  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 40930607 - 40930542
Alignment:
Q  186 acttgggaattatggggtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaa 251  Q
    ||||||| |||||||||| |  |||| ||||||||||||| |||||| | |||||||| |||||||    
T  40930607 acttgggtattatggggtcctcaagttccacatcgagtagcatgggatgttcggtggagtatttaa 40930542  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 47484326 - 47484274
Alignment:
Q  186 acttgggaattatggggtgccaaagtcccacatcgagtagtatgggacgctcgg 239  Q
    ||||||| ||||||||||||| |||||||||| |||||||| ||||| ||||||    
T  47484326 acttgggtattatggggtgcc-aagtcccacaacgagtagtgtgggatgctcgg 47484274  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 13253323 - 13253371
Alignment:
Q  194 attatggggtgccaaagtcccacatcgagtagtatgggacgctcggtgg 242  Q
    |||||| |||||| ||||||||||| ||| ||||||||| |||||||||    
T  13253323 attatgaggtgcccaagtcccacattgagcagtatgggatgctcggtgg 13253371  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 46288416 - 46288495
Alignment:
Q  186 acttgggaattatggggtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaagtggcttgtttctt 265  Q
    ||||||| |||| |||| | | |||||||||||||| |||||||||| |||||||||| ||||||||||||||| |||||    
T  46288416 acttgggtattaaggggagtccaagtcccacatcgattagtatgggatgctcggtggagtatttaagtggcttggttctt 46288495  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 271
Target Start/End: Complemental strand, 35282921 - 35282836
Alignment:
Q  186 acttgggaattatggggtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaagtggcttgtttcttctcact 271  Q
    ||||||| |||| ||| |||| ||| |||||||  ||||||||||||  ||| ||||| || |||||||||||| |||||| ||||    
T  35282921 acttgggtattacgggttgcctaagccccacatgaagtagtatgggatactcagtggagtacttaagtggcttggttcttcccact 35282836  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 5404620 - 5404692
Alignment:
Q  194 attatggggtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaagtggcttgtttcttc 266  Q
    |||||| |||| | ||||||||||||  ||| ||||||| |||||||||| |||||| |||| ||| ||||||    
T  5404620 attatgtggtgtccaagtcccacatcatgtactatgggatgctcggtggagtatttaggtggtttgattcttc 5404692  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 22151768 - 22151686
Alignment:
Q  184 gaacttgggaattatggggtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaagtggcttgtttcttc 266  Q
    ||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||  ||||  ||||||||||||| | ||||||    
T  22151768 gaacttgggtattatggggtgcctaagtcccacatcgagtaatatgggatgcttagtggcgtatttaagtggctcggttcttc 22151686  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 33987816 - 33987757
Alignment:
Q  200 gggtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaagtggcttg 259  Q
    ||||||| |||||||| |||||||||||| ||| |||||||||| | |||||||||||||    
T  33987816 gggtgcccaagtcccatatcgagtagtatcggatgctcggtggagtgtttaagtggcttg 33987757  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 846395 - 846342
Alignment:
Q  213 ccacatcgagtagtatgggacgctcggtggaatatttaagtggcttgtttcttc 266  Q
    |||||| |||||||||| || |||||||||| ||||||||||||||| ||||||    
T  846395 ccacattgagtagtatgagatgctcggtggagtatttaagtggcttggttcttc 846342  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 31277343 - 31277276
Alignment:
Q  187 cttgggaattatggggtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaagtg 254  Q
    |||||| ||||||||||||  |||||||||||||||| ||||| || |||||| | | ||||||||||    
T  31277343 cttgggtattatggggtgcacaagtcccacatcgagtggtatgagatgctcggggaagtatttaagtg 31277276  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 30036908 - 30036981
Alignment:
Q  186 acttgggaattatggggtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaagtggcttg 259  Q
    ||||||| ||||||||| ||  ||||||||| ||||||||||||||| |||||||||| |||||| ||||||||    
T  30036908 acttgggtattatggggggcacaagtcccacgtcgagtagtatgggaggctcggtggactatttatgtggcttg 30036981  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 37615460 - 37615405
Alignment:
Q  211 tcccacatcgagtagtatgggacgctcggtggaatatttaagtggcttgtttcttc 266  Q
    ||||| ||||||||||||| || |||||||||| ||||||||||||||| ||||||    
T  37615460 tcccatatcgagtagtatgagatgctcggtggagtatttaagtggcttggttcttc 37615405  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 27667256 - 27667188
Alignment:
Q  186 acttgggaattatggggtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaagtg 254  Q
    ||||||| ||||||||||| | |||||||||||||||||||||| ||  ||| ||||| ||||| ||||    
T  27667256 acttgggtattatggggtggctaagtcccacatcgagtagtatgagatactcagtggagtatttgagtg 27667188  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 24840404 - 24840346
Alignment:
Q  208 aagtcccacatcgagtagtatgggacgctcggtggaatatttaagtggcttgtttcttc 266  Q
    ||||||||||||||||||||| ||| ||||  |||| |||||| |||||||| ||||||    
T  24840404 aagtcccacatcgagtagtataggatgctcaatggagtatttatgtggcttggttcttc 24840346  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 7201052 - 7200995
Alignment:
Q  202 gtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaagtggcttg 259  Q
    ||||| ||||| ||||| |||||||||| || ||| |||||| |||||||||||||||    
T  7201052 gtgcccaagtctcacattgagtagtatgagatgcttggtggagtatttaagtggcttg 7200995  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 265
Target Start/End: Complemental strand, 12973952 - 12973872
Alignment:
Q  185 aacttgggaattatggggtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaagtggcttgtttctt 265  Q
    |||||||| |||||||||  |  | |||||||||| || ||||||||| ||| |||| |||||||||||| |||| |||||    
T  12973952 aacttgggtattatggggctctcatgtcccacatcaagcagtatgggatgcttggtgaaatatttaagtgacttggttctt 12973872  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 21665796 - 21665736
Alignment:
Q  208 aagtcccacatcgagtagtatgggacgctcggtggaatatttaagtggcttgtttcttctc 268  Q
    ||||||||||| ||| | ||||||| | |||||||| ||||||||||| ||| ||||||||    
T  21665796 aagtcccacattgagcattatgggatgttcggtggagtatttaagtggattgcttcttctc 21665736  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 39758640 - 39758720
Alignment:
Q  185 aacttgggaattatggggtgccaaagtcccacatcgagtagtatgggacgctcggtggaatatttaagtggcttgtttctt 265  Q
    |||||||| ||||||||| ||| ||||||||||||| |||| | || | |||||||||| || |||| ||| ||| |||||    
T  39758640 aacttgggtattatggggcgccgaagtcccacatcgggtaggacggaatgctcggtggagtagttaaatggtttggttctt 39758720  T

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