View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_high_69 (Length: 264)
Name: NF7337_high_69
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_69 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 41986508 - 41986278
Alignment:
| Q |
15 |
tatgtgcagctagttcttcatctatagtttttactttttaacaaggccttcactgatgttcttttcactgttctatacttagaaaggaactaaggatagc |
114 |
Q |
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| T |
41986508 |
tatgtgcagctagttcttcatctatagtttttactttttaacaaggcctccactgatgttcttttcactgttctatacttagaaaggaactaaggatagc |
41986409 |
T |
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| Q |
115 |
aataaaatnnnnnnnnctttcgccaaacatgactaattatttcttcgtgttactgannnnnnnnccctacttcacaaatactgtattaatcaccctaacc |
214 |
Q |
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| T |
41986408 |
aataaaa-aacaaaaaatttcgccaaacatgactaattatttcttcatgttactgatttttttttcctacttcacaaatactgtattaatcaccctaacc |
41986310 |
T |
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| Q |
215 |
ttatttgtgactgcatcacacaattaagagag |
246 |
Q |
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| T |
41986309 |
ttatttgtgactgcatcacacaattaagagag |
41986278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 41984316 - 41984263
Alignment:
| Q |
49 |
tttttaacaaggccttcactgatgttcttttcactgttctatacttagaaagga |
102 |
Q |
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|||||||||||||||||||| ||||| ||||||| |||| ||||||| ||||| |
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| T |
41984316 |
tttttaacaaggccttcactaatgttgatttcactattctgtacttagtaagga |
41984263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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