View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7337_high_7 (Length: 672)

Name: NF7337_high_7
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7337_high_7
NF7337_high_7
[»] chr5 (1 HSPs)
chr5 (1-654)||(32801247-32801901)


Alignment Details
Target: chr5 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 1 - 654
Target Start/End: Original strand, 32801247 - 32801901
Alignment:
Q  1 ctggtaaaccttttcagggtcaggaagaactttcttgacagattctctttgcaagctcctcttaatccaagctgagatttttggggagtgatcttcaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32801247 ctggtaaaccttttcagggtcaggaagaactttcttgacagattctctttgcaagctcctcttaatccaagctgagatttttggggagtgatcttcaact 32801346  T
Q  101 ttgaaattaccaagtttctcgtatgctgagaaccatgcagaatgaggaatggctatgatatctacataaccaaagacatcaccaccaaagtagtctttct 200  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32801347 ttgaaattaccaagtttctcatatgctaagaaccatgcagaatgaggaatggctatgatatctacataaccaaagacatcaccaccaaagtagtctttct 32801446  T
Q  201 ctccaagagcttcttccagatgctttaaaacttcaatgaagtcccgtgttccgacttctctctcttctccattgctagcccaaatgctcctcccagtgtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32801447 ctccaagagcttcttccagatgctttaaaacttcaatgaagtcccgtgttccgacttctctctcttctccattgctagcccaaatgctcctcccagtgtc 32801546  T
Q  301 aaataccttcccatacaagtcatcatatccaatatcatatatgtgtaaatgaacacaccaaaaacaaatatgtataaatggtgaatatttacaacatttt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32801547 aaataccttcccatacaagtcatcatatccaatatcatatatgtgtaaatgaacacaccaaaaa-aaatatgtataaatggtgaatatttacaacatttt 32801645  T
Q  401 agtatatagctattgggtagagattttgaggtattcaacaatttggaggtattgaaaaatatgtcttcacatttgtccttagtccttcaaagacaatttc 500  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  32801646 agtctatagctattgggtagagattttgaggtattcaacaatttgtaggtattgaaaaatatgtcttcacatttgtccttagtccttctaagtcaatttc 32801745  T
Q  501 acac--ttaaaaactttggatatgaaattgactgaccgacaaaattaatgtgatcaaacattttcaatttcaacgatcgttttagaattttattatttca 598  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32801746 acacttttaaaaactttggatatgaaattgactgaccgacaaaattaatgtgatcaaagattttcaatttcaacgatcgttttagaattttattatttca 32801845  T
Q  599 cggtcaaattatctaacacgtacaatttcttagacaaaattaaggataaacttttt 654  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32801846 cggtcaaattatctaacacgtacaatttcttagacaaaattaaggataaacttttt 32801901  T

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