View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_high_71 (Length: 261)
Name: NF7337_high_71
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_71 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 261
Target Start/End: Original strand, 24852029 - 24852295
Alignment:
| Q |
4 |
gagagaagaaagtgtatctaattttatgtgattttcctttacagcaagaagagcaacagtctaagttttggttagttggaaaaggaattttacatattca |
103 |
Q |
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| T |
24852029 |
gagagatgaaagtgtatctaattttatgtgattttcctttacagcaagaagagcaacagtctaagttttggttagttggaaaaggaattttacacattca |
24852128 |
T |
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| Q |
104 |
aaatggattttacagcttgaggatgacctagtctaaggtttcccattgtgtaagtgtgttggctaagatcaaagaagcaggattactatt---------a |
194 |
Q |
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| T |
24852129 |
aaatggattttacagcttgaggatgacctagtctaaggtttcccattgtgtgagtgtgttggctaagatcaaagaagcagtactactattagtagagcca |
24852228 |
T |
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| Q |
195 |
gtaggaaactaaagcttgaaaggcttgaacttgtataggcaatctaaaccaactgcaccttcaagga |
261 |
Q |
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| T |
24852229 |
gtaggaaactaaagcttgaaaggcttgaacttgtataggcaatctaaaccaactgcaccttcaagga |
24852295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 24839872 - 24839923
Alignment:
| Q |
210 |
ttgaaaggcttgaacttgtataggcaatctaaaccaactgcaccttcaagga |
261 |
Q |
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| T |
24839872 |
ttgaaaggcttgaacttgtataggccatctaaaccaactgcaccttcaagga |
24839923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 24839604 - 24839711
Alignment:
| Q |
26 |
tttatgtgattttcctttacagcaagaagagcaacagtctaagttttggttagttggaaaaggaatttt----acatattcaaaatggattttacagctt |
121 |
Q |
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| T |
24839604 |
tttatctgatttccctatacagcaagatgtgcaacattctaagttttgcttacttggcaaaggaattttacacacaaattcaaaatggattttactgttt |
24839703 |
T |
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| Q |
122 |
gaggatga |
129 |
Q |
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| T |
24839704 |
gaggatga |
24839711 |
T |
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