View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7337_high_9 (Length: 630)

Name: NF7337_high_9
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7337_high_9
NF7337_high_9
[»] chr1 (4 HSPs)
chr1 (17-612)||(33301839-33302432)
chr1 (450-614)||(33250233-33250397)
chr1 (450-614)||(33270405-33270569)
chr1 (477-610)||(33310144-33310277)
[»] chr7 (2 HSPs)
chr7 (248-343)||(21148660-21148755)
chr7 (242-325)||(34726588-34726671)
[»] chr2 (3 HSPs)
chr2 (236-430)||(2419882-2420076)
chr2 (307-430)||(42510694-42510818)
chr2 (132-216)||(41513823-41513910)
[»] chr8 (2 HSPs)
chr8 (269-430)||(13054306-13054464)
chr8 (373-422)||(11567574-11567623)
[»] chr6 (1 HSPs)
chr6 (367-422)||(5550798-5550853)
[»] chr4 (1 HSPs)
chr4 (235-321)||(34069128-34069214)
[»] chr3 (2 HSPs)
chr3 (372-430)||(15801460-15801518)
chr3 (269-357)||(40192019-40192108)


Alignment Details
Target: chr1 (Bit Score: 552; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 17 - 612
Target Start/End: Complemental strand, 33302432 - 33301839
Alignment:
Q  17 atcatgcagttattagaggcattaggtatgattcaactataataatatactttggtagtgtgttttttggtttgattaaatatgcattttactatttgga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33302432 atcatgcagttattagaggcattaggtatgattcaactataatagtatactttggtagtgtgttttttggtttgattaaatatgcattttactatttgga 33302333  T
Q  117 attataaggcttgatcaatttaatccctcatatttgcaaattaacattttagtcccttaaattgaaaaacaatcaatctactccctccatcaaaatattt 216  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33302332 attataaggcttgatca-tttaatccctcatatttgcaaaataacattttagtcccttaaattgaaaaacaatcaatctactccctccatcaaaatattt 33302234  T
Q  217 atatagtaaagaacaatagaagacgtacatattgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttga 316  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |    
T  33302233 atatagtaaagaacaatagaagacgtaagtattgacttaagtagtattttcctgcatcaaaacaagcatagaatctttaaaattctgatacaaaattata 33302134  T
Q  317 gaaaatgactaaatcggttgatatttttaaattcaaggactaaaatgttattttaaaaatttgagcgactaaattgaccgacctttacattttcaaagac 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33302133 gaaaatgactaaatcggttgatatttttaaattcaaggactaaaatgttattttaaaaatttgagcgactaaattgaccgacctttacattttcaaagac 33302034  T
Q  417 taaaatacctatttcctctcttgtgtatgatatagttaacattttcctattggaattttaacaggagagctattatgacaaggagggcagtgagggtgaa 516  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33302033 taaaatacctatttcctctcttgtgtatgatatagttaaca-tttcctattggaattttaacaggagagctattatgacaaggagggcagtgagggtgaa 33301935  T
Q  517 ttcacaattgaaatcacacaaaagatttgctaatgcatttccaagatattgcaaacttgttgataatgccagactctattgcacaaatgatgttgg 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33301934 ttcacaattgaaatcacacaaaagatttgctaatgcatttccaagatattgcaaacttgttgataatgccagactctattgcacaaatgatgttgg 33301839  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 450 - 614
Target Start/End: Complemental strand, 33250397 - 33250233
Alignment:
Q  450 agttaacattttcctattggaattttaacaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaa 549  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  33250397 agttaacattttccttttggaattttaacaggagagctattatgacagggagggcagtgagggtgaattcacagttgcaatctcacaaaagatttgctaa 33250298  T
Q  550 tgcatttccaagatattgcaaacttgttgataatgccagactctattgcacaaatgatgttggtg 614  Q
    ||||||||||| ||| |||||||||||||| | ||| || |||||||||||| ||| ||||||||    
T  33250297 tgcatttccaaaatactgcaaacttgttgacagtgctaggctctattgcacagatgctgttggtg 33250233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 450 - 614
Target Start/End: Complemental strand, 33270569 - 33270405
Alignment:
Q  450 agttaacattttcctattggaattttaacaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaa 549  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  33270569 agttaacattttccttttggaattttaacaggagagctattatgacagggagggcagtgagggtgaattcacagttgcaatctcacaaaagatttgctaa 33270470  T
Q  550 tgcatttccaagatattgcaaacttgttgataatgccagactctattgcacaaatgatgttggtg 614  Q
    ||||||||||| ||| |||||||||||||| | ||| || |||||||||||| ||| ||||||||    
T  33270469 tgcatttccaaaatactgcaaacttgttgacagtgctaggctctattgcacagatgctgttggtg 33270405  T

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Target: chr1; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 477 - 610
Target Start/End: Complemental strand, 33310277 - 33310144
Alignment:
Q  477 acaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaatgcatttccaagatattgcaaacttgt 576  Q
    ||||||||||||| |||||||  |||||||| |||||||| |||||| || |||| |||||||||||||||||||||||||||| ||||||| |||||||    
T  33310277 acaggagagctatcatgacaaaaagggcagtaagggtgaaatcacaactggaatctcacaaaagatttgctaatgcatttccaaaatattgcgaacttgt 33310178  T
Q  577 tgataatgccagactctattgcacaaatgatgtt 610  Q
    ||| | ||| || || |||| ||||| |||||||    
T  33310177 tgacagtgctaggctatattacacaagtgatgtt 33310144  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 248 - 343
Target Start/End: Original strand, 21148660 - 21148755
Alignment:
Q  248 ttgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgactaaatcggttgatatttt 343  Q
    ||||||||| |||| |||||||| |||||||||| |||| || |||||||||| ||||| | || |||| ||||||||||||| | ||||||||||    
T  21148660 ttgacttaaatagtgttttcttgaatcaaaacaaacataaaacctttaaaattgtgataaagaaattgataaaatgactaaattgattgatatttt 21148755  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 34726671 - 34726588
Alignment:
Q  242 tacatattgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgac 325  Q
    ||||||||||||||| |||| ||||  ||||||||||||||||||||| |||| |||||  |||  ||||||||| ||||||||    
T  34726671 tacatattgacttaaatagtcttttgctgcatcaaaacaagcatagaaccttttaaattgagatggaaaatttgaaaaaatgac 34726588  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 236 - 430
Target Start/End: Original strand, 2419882 - 2420076
Alignment:
Q  236 aagacgtacatattgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgactaaatcggtt 335  Q
    ||||| ||||||| || |||| |||| |||| |||||||||||||||  || || ||||||| || || | |||||||||| |||| |||||||| | ||    
T  2419882 aagacatacatatagaattaaatagtcttttgttgcatcaaaacaagtgtaaaacctttaaa-ttgtggtgcaaaatttgaaaaaaagactaaattgatt 2419980  T
Q  336 gatatttttaaattcaag-gactaaaatgttattttaaaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaatacctattt 430  Q
    |||||||||||||| ||| ||||||| || ||||| | |||||||||  ||| | || || ||   ||||| |||| | |||||||||||||||||    
T  2419981 gatatttttaaatttaagagactaaattgctatttcacaaatttgaggaactgagttaactgattgttacaatttctaggactaaaatacctattt 2420076  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 430
Target Start/End: Complemental strand, 42510818 - 42510694
Alignment:
Q  307 caaaatttgagaaaatgactaaatcggttgatatttttaaattcaagg-actaaaatgttattttaaaaatttgagcgactaaattgaccgacctttaca 405  Q
    |||||||||| ||| ||||||||| | |||| |||||| |||| |||| |||||| |  |||||   | |||| |  |||||||||||||||||||||||    
T  42510818 caaaatttgaaaaattgactaaattgtttgacatttttcaatttaagggactaaactcctatttcgcagatttcaaggactaaattgaccgacctttaca 42510719  T
Q  406 ttttcaaagactaaaatacctattt 430  Q
     |||||| ||||||||| |||||||    
T  42510718 atttcaaggactaaaatgcctattt 42510694  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 41513823 - 41513910
Alignment:
Q  132 caatttaatccctcatatttgcaaattaacattttagtcccttaaattgaaaaa---caatcaatctactccctccatcaaaatattt 216  Q
    ||||||| ||| ||| ||||||||| || ||  |||||||||||||||||||||   |||||||| || || ||||||||||||||||    
T  41513823 caatttagtccttcaaatttgcaaaatagcaagttagtcccttaaattgaaaaatatcaatcaatttagtctctccatcaaaatattt 41513910  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 430
Target Start/End: Complemental strand, 13054464 - 13054306
Alignment:
Q  269 tgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgactaaatcggttgatatttttaaattcaaggactaaaatgttatt 368  Q
    |||||||||| |||||||||| |||||||||| ||  | ||||||| | ||||||||||||  | ||||||||||| |||| ||  |||||| || ||||    
T  13054464 tgcatcaaaataagcatagaacctttaaaattgtgggataaaatttaa-aaaatgactaaaatgtttgatatttttcaatttaa--actaaattgctatt 13054368  T
Q  369 ttaaaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaatacctattt 430  Q
    | | | ||||||| |||||||||||||| || ||  | |||||| || |||||| |||||||    
T  13054367 tcacatatttgagggactaaattgaccggcccttgaaatttcaacgaataaaatgcctattt 13054306  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 11567623 - 11567574
Alignment:
Q  373 aaatttgagcgactaaattgaccgacctttacattttcaaagactaaaat 422  Q
    ||||||||| ||||||||||||||||| ||||| |||||| |||||||||    
T  11567623 aaatttgagggactaaattgaccgacccttacaatttcaaggactaaaat 11567574  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 5550798 - 5550853
Alignment:
Q  367 ttttaaaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaat 422  Q
    |||| |||||||||| || ||||||||| |||| ||||| ||||||||||||||||    
T  5550798 ttttgaaaatttgagggattaaattgacagacccttacaatttcaaagactaaaat 5550853  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 235 - 321
Target Start/End: Original strand, 34069128 - 34069214
Alignment:
Q  235 gaagacgtacatattgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaa 321  Q
    |||||||||||||| ||||||| ||||  ||| |||||||||||||| | ||   | ||||||||| || |||||||||||| ||||    
T  34069128 gaagacgtacatatcgacttaaatagttctttgttgcatcaaaacaaacctaatctgtttaaaattgtggtacaaaatttgaaaaaa 34069214  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 15801518 - 15801460
Alignment:
Q  372 aaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaatacctattt 430  Q
    |||||||||| || | |||||||||||| ||||| ||| ||||||||||||| ||||||    
T  15801518 aaaatttgagggattgaattgaccgaccgttacaatttgaaagactaaaatatctattt 15801460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 357
Target Start/End: Original strand, 40192019 - 40192108
Alignment:
Q  269 tgcatcaaaacaagcatagaatctttaaaattc-tgatacaaaatttgagaaaatgactaaatcggttgatatttttaaattcaaggact 357  Q
    ||||||||||| | ||||||| ||||||||||  || | | || ||||||||||||| ||||| | ||||||||||| |||| |||||||    
T  40192019 tgcatcaaaaccaacatagaacctttaaaatttatggtgcgaagtttgagaaaatgattaaattgattgatatttttcaatttaaggact 40192108  T

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