View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_high_95 (Length: 227)
Name: NF7337_high_95
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_95 |
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| [»] scaffold0638 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0451 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: scaffold0638 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4642 - 4868
Alignment:
| Q |
1 |
atcatgcacttgcgcttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaactcttcctcaagactcatgatcttgtctttgctagta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4642 |
atcatgcacttgcgcttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaactcttcctcaagactcatgatcttctctttgctagta |
4741 |
T |
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| Q |
101 |
gaccaccttctgaggcaggaaaactcatgttttataatcagaaagatgtgagtttcagtgtatacggttcttattggcgaaacatgcgcaagatgtgcac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4742 |
gaccaccttctgaggcaggaaaactcatgttttataatcagaaagatgtgagtttcagtgtatacggttcttattggcgaaacatgcacaagatgtgcac |
4841 |
T |
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| Q |
201 |
gttagaattgttgagccattcaaaaat |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
4842 |
gttagaattgttgagccattcaaaaat |
4868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 27411846 - 27412069
Alignment:
| Q |
4 |
atgcacttgcgcttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaactcttcctcaagactcatgatcttgtctttgctagtagac |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
27411846 |
atgcacttgcgcttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaactcttcctcaagactcatgatattgtctttgcaagtagac |
27411945 |
T |
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| Q |
104 |
caccttctgaggcaggaaaactcatgttttataatcagaaagatgtgagtttcagtgtatacggttcttattggcgaaacatgcgcaagatgtgcacgtt |
203 |
Q |
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| T |
27411946 |
cacctattgaggcagcacaactcatgttttacaatcagaaggatgtgagcttcagtgtatacggttcgtattggcgaaacatgcgcaagatgtgcacatt |
27412045 |
T |
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| Q |
204 |
agaattgttgagccattcaaaaat |
227 |
Q |
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|||||||||||||||| ||||||| |
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| T |
27412046 |
agaattgttgagccatacaaaaat |
27412069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8839 - 8613
Alignment:
| Q |
1 |
atcatgcacttgcgcttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaactcttcctcaagactcatgatcttgtctttgctagta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||| |
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| T |
8839 |
atcatgcacttgcgcttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaactctttctcaagactcatgattttgtctttgcaagta |
8740 |
T |
|
| Q |
101 |
gaccaccttctgaggcaggaaaactcatgttttataatcagaaagatgtgagtttcagtgtatacggttcttattggcgaaacatgcgcaagatgtgcac |
200 |
Q |
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|||||||| |||||||| | || ||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8739 |
gaccacctattgaggcagtataattcatgttttataatcagaaggatgttagcttcagtgtatacggttcatattggcgaaacatgcgcaagatgtgcac |
8640 |
T |
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| Q |
201 |
gttagaattgttgagccattcaaaaat |
227 |
Q |
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|||||||||||||||||||||||||| |
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| T |
8639 |
attagaattgttgagccattcaaaaat |
8613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 38261809 - 38262035
Alignment:
| Q |
1 |
atcatgcacttgcgcttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaactcttcctcaagactcatgatcttgtctttgctagta |
100 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||| |||| |
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| T |
38261809 |
atcatgcacttacgcttaggtttaataccaaccatagttgtttcatcacctcaagcagctgaacttttcctcaaaactcatgatcttgtctttgcaagta |
38261908 |
T |
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| Q |
101 |
gaccaccttctgaggcaggaaaactcatgttttataatcagaaagatgtgagtttcagtgtatacggttcttattggcgaaacatgcgcaagatgtgcac |
200 |
Q |
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|||||||| | ||||| |||| | || | || | |||| | ||||||| ||| ||| ||||||||||||||||| ||| | || |||||||| |
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| T |
38261909 |
gaccacctcatttggcagcaaaaataatctcttgggaccagaggaacttgagttttggtgaatatggttcttattggcgaaatatgagaaaaatgtgcac |
38262008 |
T |
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| Q |
201 |
gttagaattgttgagccattcaaaaat |
227 |
Q |
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| T |
38262009 |
tttagaattgttgagccatgcaaaaat |
38262035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 38258055 - 38258279
Alignment:
| Q |
4 |
atgcacttgcgcttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaactcttcctcaagactcatgatcttgtctttgctagtagac |
103 |
Q |
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|||||||| || |||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||| |
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| T |
38258055 |
atgcacttacgtttaggtttagtaccaatcatagttgtttcttcacctcaagcagctgaacttttcctcaagactcatgatcttgtctttgcaagcagac |
38258154 |
T |
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| Q |
104 |
caccttctgaggcag-gaaaactcatgttttataatcagaaagatgtgagtttcagtgtatacggttcttattggcgaaacatgcgcaagatgtgcacgt |
202 |
Q |
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|||| |||||||| |||| |||| || ||| || | ||||||| ||| ||| ||||||||||||||||||||| | || |||||||| | |
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| T |
38258155 |
caccaattgaggcagcaaaaaatcatcggttgggatcggaggaacttgagttttggtgaatatggttcttattggcgaaacatgagaaaaatgtgcactt |
38258254 |
T |
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| Q |
203 |
tagaattgttgagccattcaaaaat |
227 |
Q |
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||||||||||||||||| ||||||| |
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| T |
38258255 |
tagaattgttgagccatgcaaaaat |
38258279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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