View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7337_high_96 (Length: 227)
Name: NF7337_high_96
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_96 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 33931396 - 33931621
Alignment:
| Q |
2 |
ttgagcaaggtaaaaaattcaagactttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatga |
101 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||| |||| |||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
33931396 |
ttgagcaggttaaaaaattcaagactttagagcatccgaaaaagaagcaccttgtgtagtaattcaatccgcacactcgttgccttgatggagggtatga |
33931495 |
T |
|
| Q |
102 |
tgaaaataaaaaatctaatctcgatgctgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33931496 |
tgaaaataaaaaatctaatctcgatgttgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaa |
33931595 |
T |
|
| Q |
202 |
aagagtcatcctaaaatctgattcaa |
227 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
33931596 |
aagagtcatcctaaaatctgattcaa |
33931621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 5171394 - 5171190
Alignment:
| Q |
21 |
caagactttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaat |
120 |
Q |
| |
|
||||||||||||| || ||||||||||||| | || ||| |||||||||||||||||||||||||||| | | ||||| |||||||| || ||| ||| |
|
|
| T |
5171394 |
caagactttagagtatccgaagaagaagcaccatgcttagcaagccaatccgcacactcgttgccttgacggagggtataatgaaaattaacaattcaat |
5171295 |
T |
|
| Q |
121 |
ctcgatgctgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatct |
220 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
5171294 |
ctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagattggacatccgacatgattaaatc--aagagccatcctagaatct |
5171197 |
T |
|
| Q |
221 |
gattcaa |
227 |
Q |
| |
|
|| |||| |
|
|
| T |
5171196 |
gactcaa |
5171190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 43 - 227
Target Start/End: Complemental strand, 6771130 - 6770948
Alignment:
| Q |
43 |
aagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcagttggagaat |
142 |
Q |
| |
|
|||||||||| || ||| ||||||||||||||||||||| |||||| | | || ||| ||||||| || ||| |||||||||| |||||||||| ||| |
|
|
| T |
6771130 |
aagaagcatcatgcttagcaagccaatccgcacactcgttaccttgacggagggcatgctgaaaatgaacaattcaatctcgatgttgcagttggacaat |
6771031 |
T |
|
| Q |
143 |
caaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaa |
227 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| || ||||| ||||||||||||||| ||||| ||||||| ||| |||||||| |
|
|
| T |
6771030 |
ctgactaatcagaggagcatgaggatgatgagattcgacattcgacatgattaaatc--aagagccatcctataatttgattcaa |
6770948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 201
Target Start/End: Complemental strand, 39989408 - 39989270
Alignment:
| Q |
62 |
aagccaatccgcacactcgttgccttgatgta-tggtatgatgaaaataaaaaatctaatctcgatgctgcagttggagaatcaaactaatcagagaagc |
160 |
Q |
| |
|
||||||||||||||||||||||||||| | | |||||||||||||| || |||| |||||||||| ||||||| || | || |||| ||||||||||| |
|
|
| T |
39989408 |
aagccaatccgcacactcgttgccttggcggaggggtatgatgaaaattaacaatccaatctcgatgatgcagttagacattctaacttatcagagaagc |
39989309 |
T |
|
| Q |
161 |
atgaggatgatgaggttggacatccgacatgattaaatcaa |
201 |
Q |
| |
|
|| |||||||||||||| | |||| ||||||||| ||||| |
|
|
| T |
39989308 |
ataaggatgatgaggtttg--atccaacatgattagatcaa |
39989270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 15917176 - 15917388
Alignment:
| Q |
13 |
aaaaaattcaagactttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaa |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| || ||| |||||||||||||||| |||| |||||| | | |||||||||||||| || |
|
|
| T |
15917176 |
aaaaaatccaagactttagagcatacgaagaagaagcatcatgcttagcaagccaatccgcacacgcgttaccttgacggagggtatgatgaaaattaac |
15917275 |
T |
|
| Q |
113 |
aatctaatctcgatgctgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcc |
212 |
Q |
| |
|
||| |||||||||| |||||||||| |||| |||||| |||| |||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
15917276 |
aatgcaatctcgatgttgcagttggacaatctgactaattagaggagcatggggatgatgagattggacatccgacatgattaaatc--aagagccatcc |
15917373 |
T |
|
| Q |
213 |
taaaatctgattcaa |
227 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
15917374 |
taaaatctgattcaa |
15917388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 8567528 - 8567719
Alignment:
| Q |
13 |
aaaaaattcaagactttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaa |
112 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||| | ||| ||| ||||| |||||||||||||||| | | |||||||||||||| || |
|
|
| T |
8567528 |
aaaaaatccaagactttagagcatccgaagaagaagcatcgtacttagcaagtcaatctgcacactcgttgccttaacagagggtatgatgaaaattaat |
8567627 |
T |
|
| Q |
113 |
aatctaatctcgatgctgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaag |
204 |
Q |
| |
|
||| |||||||||| | |||||||| |||| |||||||| || ||||||| |||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
8567628 |
aattcaatctcgatgttacagttggacaatctgactaatcaaaggagcatgaagatgatgaggttcgacatccgacatgattagatcaaaag |
8567719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 7022950 - 7022750
Alignment:
| Q |
25 |
actttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcg |
124 |
Q |
| |
|
|||||||||||| ||||||||||||| | || ||| ||| |||||||||||||||||||||||| | | |||||||||||||| || |||| ||||||| |
|
|
| T |
7022950 |
actttagagcatccgaagaagaagcaccatgcttagcaagtcaatccgcacactcgttgccttgacggagggtatgatgaaaattaacaatccaatctcg |
7022851 |
T |
|
| Q |
125 |
atgctgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgatt |
224 |
Q |
| |
|
||| |||||||||| |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| ||||||| | |
|
|
| T |
7022850 |
atgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagattggacatccgacatgattaaatc--aagagccatcctagaatctgact |
7022753 |
T |
|
| Q |
225 |
caa |
227 |
Q |
| |
|
||| |
|
|
| T |
7022752 |
caa |
7022750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 34252444 - 34252262
Alignment:
| Q |
21 |
caagactttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaat |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | || ||| |||||||||||||||| ||||||||||| | | |||||||||||||| || |||| ||| |
|
|
| T |
34252444 |
caagactttagagcatccgaagaagaagcaccatgcttagcaagccaatccgcacacccgttgccttgacggagggtatgatgaaaattaacaatccaat |
34252345 |
T |
|
| Q |
121 |
ctcgatgctgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatcc--gacatgattaaatcaa |
201 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||||| |||||||||||||| || |||||||||| |||||||||||||||| |
|
|
| T |
34252344 |
ctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgataagattggacatccgagacatgattaaatcaa |
34252262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 26292215 - 26292419
Alignment:
| Q |
21 |
caagactttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaat |
120 |
Q |
| |
|
||||| |||||||||| |||||||||||||| || ||| ||||||||||| ||||| |||||||||| | | ||| || ||||||| || |||| ||| |
|
|
| T |
26292215 |
caagagtttagagcatccgaagaagaagcattatgcttagcaagccaatccgtacacttgttgccttgacggagggtctgttgaaaattaacaatccaat |
26292314 |
T |
|
| Q |
121 |
ctcgatgctgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatct |
220 |
Q |
| |
|
|||||| |||| ||||| |||| ||||||||||| ||||||||||||| ||| ||||||| ||||||| ||||||| ||||| | ||||| ||||| |
|
|
| T |
26292315 |
atcgatgttgcaattggaaaatccgactaatcagaggagcatgaggatgacgagattggacactcgacatgtttaaatc--aagagccctcctagaatct |
26292412 |
T |
|
| Q |
221 |
gattcaa |
227 |
Q |
| |
|
||||||| |
|
|
| T |
26292413 |
gattcaa |
26292419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 227
Target Start/End: Complemental strand, 10570704 - 10570580
Alignment:
| Q |
101 |
atgaaaataaaaaatctaatctcgatgctgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatca |
200 |
Q |
| |
|
|||||||| || |||| |||||||||| |||||||| | ||| |||||| |||| | || || ||||| ||||||||| ||||||||| ||||||| | |
|
|
| T |
10570704 |
atgaaaattaacaatccaatctcgatgttgcagttgaactatctgactaataagaggaacacgatgatgacgaggttggatatccgacataattaaatta |
10570605 |
T |
|
| Q |
201 |
aaagagtcatcctaaaatctgattcaa |
227 |
Q |
| |
|
| ||| ||||||| |||||||||||| |
|
|
| T |
10570604 |
a--gagccatcctagaatctgattcaa |
10570580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 5952813 - 5953023
Alignment:
| Q |
15 |
aaaattcaagactttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaa |
114 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||| | || ||| ||||||||| ||||||||||| |||||| | | |||||| ||||||| || || |
|
|
| T |
5952813 |
aaaatccaagactttagagcattcgaagaagaagcaccatgcttagcaagccaatctgcacactcgttaccttgacgaagggtatgctgaaaatgaacaa |
5952912 |
T |
|
| Q |
115 |
tctaatctcgatgctgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatccta |
214 |
Q |
| |
|
|| |||||||||| |||||||||| |||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| ||| | ||||||| |
|
|
| T |
5952913 |
tccaatctcgatgttgcagttggacaatctgactaatcataggagcatgaggatgatgagattggacatccgacatgattaaatc--aagggccatccta |
5953010 |
T |
|
| Q |
215 |
aaatctgattcaa |
227 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5953011 |
gaatctgattcaa |
5953023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 38024777 - 38024628
Alignment:
| Q |
25 |
actttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcg |
124 |
Q |
| |
|
||||| |||||| |||||||||||||| || ||| ||| |||||||||||||||||||||||| | | |||||||||||||| || |||| ||||||| |
|
|
| T |
38024777 |
actttggagcatctgaagaagaagcatcatgcttagcaagtcaatccgcacactcgttgccttgacggagggtatgatgaaaattaacaatccaatctcg |
38024678 |
T |
|
| Q |
125 |
atgctgcagttggagaatcaaactaatcagagaagcatgaggatgatgag |
174 |
Q |
| |
|
||| |||||||||| |||| ||||||||||| ||||||||||||||||| |
|
|
| T |
38024677 |
atgttgcagttggacaatctgactaatcagaggagcatgaggatgatgag |
38024628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 33192768 - 33192694
Alignment:
| Q |
62 |
aagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcagttg |
136 |
Q |
| |
|
|||||||| |||||||||||| |||||| | | |||||||||||||| || ||| |||||||||| |||||||| |
|
|
| T |
33192768 |
aagccaattcgcacactcgtttccttgacggagggtatgatgaaaattaacaattcaatctcgatgttgcagttg |
33192694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 19816265 - 19816477
Alignment:
| Q |
13 |
aaaaaattcaagactttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaa |
112 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||||||||| | || ||| ||||||||||||||||||||| |||||| | | ||||||||||||| || |
|
|
| T |
19816265 |
aaaaaatccaagactttagatcatccgaagaagaagcaccatgcttagcaagccaatccgcacactcgttaccttgacggagagtatgatgaaaatgaac |
19816364 |
T |
|
| Q |
113 |
aatctaatctcgatgctgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcc |
212 |
Q |
| |
|
|||| ||||| |||| |||||||||| |||| ||||||||| | ||||||||||||||||| || |||||||||||||||||||| ||||| ||||| |
|
|
| T |
19816365 |
aatccaatcttgatgttgcagttggacaatctgactaatcaggggagcatgaggatgatgagattcaacatccgacatgattaaatc--aagagccatcc |
19816462 |
T |
|
| Q |
213 |
taaaatctgattcaa |
227 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
19816463 |
tagaatctgattcaa |
19816477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 21375168 - 21375056
Alignment:
| Q |
21 |
caagactttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaat |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | || ||| |||||||||||||||||||||||||||||| | |||||||||||||| || |||||||| |
|
|
| T |
21375168 |
caagactttagagcattcgaagaagaagcaccatgcttagcaagccaatccgcacactcgttgccttgatggaaggtatgatgaaaattaacaatctaat |
21375069 |
T |
|
| Q |
121 |
ctcgatgctgcag |
133 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
21375068 |
ctcgatgttgcag |
21375056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 1804668 - 1804489
Alignment:
| Q |
21 |
caagactttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatg--gtatgatgaaaataaaaaatcta |
118 |
Q |
| |
|
||||||||||||| || ||||||||||||| | || ||| ||| ||||| ||||||||||| |||||| | | | ||||||||||||| || |||| | |
|
|
| T |
1804668 |
caagactttagagtatccgaagaagaagcaccatgcttagcaagtcaatctgcacactcgttaccttgacggaggctgtatgatgaaaattaacaatcca |
1804569 |
T |
|
| Q |
119 |
atctcgatgctgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaat |
198 |
Q |
| |
|
|| |||||| ||||| |||| |||| ||||||||||| ||||||| ||||||||| ||||||||||||||| ||||||| |
|
|
| T |
1804568 |
atatcgatgttgcaggtggacaatctaactaatcagaagagcatgaagatgatgagcttggacatccgacataattaaat |
1804489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 29018539 - 29018721
Alignment:
| Q |
21 |
caagactttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgcaca--ctcgttgccttgatgtatggtatgatgaaaataaaaaatcta |
118 |
Q |
| |
|
||||| ||||||||||| |||||||||||| | || | | ||||||||||||||| ||||||||||||| | |||| ||| ||||||| | |||| | |
|
|
| T |
29018539 |
caagattttagagcatatgaagaagaagcaccatgctttgcaagccaatccgcacacactcgttgccttgacggatggaatgttgaaaattgacaatcca |
29018638 |
T |
|
| Q |
119 |
atctcgatgctgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaa |
201 |
Q |
| |
|
||||||||| || ||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29018639 |
atctcgatgttgtagttggacaatctgactaatcagaggagcatgaggatgatgaggttggacatccgacatgattagatcaa |
29018721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 55428881 - 55429063
Alignment:
| Q |
13 |
aaaaaattcaagactttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaa |
112 |
Q |
| |
|
||||||| |||||||||| ||||| | || |||||||| | || ||| ||||||||||||||||||||| |||||| | | |||||||||||||| || |
|
|
| T |
55428881 |
aaaaaatccaagactttaaagcatccaaataagaagcaccatgcttagcaagccaatccgcacactcgttaccttgacggagggtatgatgaaaatgaac |
55428980 |
T |
|
| Q |
113 |
aatctaatctcgatgctgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaa |
201 |
Q |
| |
|
|||| ||||| |||| ||||| |||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
55428981 |
aatccaatctagatg------ttggacaatctgactaatcagaggagcatgaggatgatgagattcgacatccgacatgattaaatcaa |
55429063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 17065116 - 17065302
Alignment:
| Q |
40 |
aagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcagttggag |
139 |
Q |
| |
|
||||||||||| | ||| ||| ||| |||| || |||||||||||||||||| | ||||||||||||| || |||| ||||||| || || |||| |
|
|
| T |
17065116 |
aagaagaagcaccatgtttagcaagtcaattcgtacactcgttgccttgatggagagtatgatgaaaattaacaatcctatctcgacaatggagctggac |
17065215 |
T |
|
| Q |
140 |
aatcaaactaa-tcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaa |
227 |
Q |
| |
|
|||| |||||| | | | || || ||||||||||||||||| || |||||| |||||||| |||||||| |||| |||| ||||||| |
|
|
| T |
17065216 |
aatctaactaattaaaaaaaacaaaaggatgatgaggttggaaattcgacataattaaatc--aagagtcaccctagaatcggattcaa |
17065302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 9992852 - 9993025
Alignment:
| Q |
18 |
attcaagactttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatct |
117 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||| | || ||||| |||||||||||||||||||||||||| | | |||||||||||||| || |||| |
|
|
| T |
9992852 |
attcaagattttagagcatccgaagaagaagcaccatgcttagta-gccaatccgcacactcgttgccttgacgaagggtatgatgaaaattaacaatcc |
9992950 |
T |
|
| Q |
118 |
aatctcgatgctgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatga |
192 |
Q |
| |
|
|||||||| | |||||||||| ||| |||||||| || |||||||||||||| || ||||||||||||||||| |
|
|
| T |
9992951 |
aatctcgacgatgcagttggacaatttgactaatcaaaggagcatgaggatgataagattggacatccgacatga |
9993025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 9388806 - 9388963
Alignment:
| Q |
25 |
actttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcg |
124 |
Q |
| |
|
|||||||||||| ||||||||||||| | | ||| ||||||||| |||||||| || ||||| | |||||||||||||| || |||| ||||||| |
|
|
| T |
9388806 |
actttagagcatccgaagaagaagcaccatacttagcaagccaatctgcacactcaatgtcttgacagagggtatgatgaaaattaacaatccaatctcg |
9388905 |
T |
|
| Q |
125 |
atgctgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggaca |
182 |
Q |
| |
|
||| |||||||||| |||| |||||| |||| ||||| |||||||||| ||||||| |
|
|
| T |
9388906 |
atgttgcagttggacaatctgactaataagaggagcatcaggatgatgatattggaca |
9388963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 7812987 - 7813027
Alignment:
| Q |
8 |
aaggtaaaaaattcaagactttagagcatacgaagaagaag |
48 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
7812987 |
aaggcaaaaaattcaagactttagagcatctgaagaagaag |
7813027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 201
Target Start/End: Complemental strand, 28175377 - 28175238
Alignment:
| Q |
62 |
aagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcagttggagaatcaaactaatcagagaagca |
161 |
Q |
| |
|
|||||||| |||||||||||||||||| | | |||||||||||||| || | || |||||||||| || | ||||| |||| |||||| |||| |||| |
|
|
| T |
28175377 |
aagccaatttgcacactcgttgccttgacggagggtatgatgaaaattaacattccaatctcgatgttgtaattggacaatcttactaataagaggagca |
28175278 |
T |
|
| Q |
162 |
tgaggatgatgaggttggacatccgacatgattaaatcaa |
201 |
Q |
| |
|
||| |||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
28175277 |
tgaaaatgatgaggttgaacatccgacaagattagatcaa |
28175238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 6642351 - 6642297
Alignment:
| Q |
147 |
ctaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaa |
201 |
Q |
| |
|
||||||| || || || ||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
6642351 |
ctaatcacaggagaataaggataatgaggttggacatccaacatgattaaatcaa |
6642297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University