View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7337_low_10 (Length: 622)

Name: NF7337_low_10
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7337_low_10
NF7337_low_10
[»] chr5 (1 HSPs)
chr5 (332-604)||(22486627-22486896)
[»] chr4 (7 HSPs)
chr4 (217-332)||(46551141-46551256)
chr4 (1-102)||(46550925-46551026)
chr4 (224-328)||(38937462-38937566)
chr4 (223-332)||(10977903-10978012)
chr4 (501-557)||(54089278-54089334)
chr4 (404-463)||(54475409-54475468)
chr4 (380-424)||(28323816-28323860)
[»] chr8 (1 HSPs)
chr8 (219-330)||(4940888-4940999)
[»] chr1 (2 HSPs)
chr1 (332-557)||(29100809-29101035)
chr1 (359-465)||(24530991-24531097)
[»] chr7 (3 HSPs)
chr7 (356-465)||(49011514-49011623)
chr7 (223-317)||(40872578-40872671)
chr7 (219-273)||(24122805-24122859)
[»] scaffold0041 (1 HSPs)
scaffold0041 (223-317)||(93611-93704)
[»] scaffold0472 (1 HSPs)
scaffold0472 (223-313)||(8697-8786)
[»] chr3 (1 HSPs)
chr3 (503-553)||(36834068-36834118)
[»] chr2 (1 HSPs)
chr2 (407-463)||(14651675-14651731)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 1e-98; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 332 - 604
Target Start/End: Complemental strand, 22486896 - 22486627
Alignment:
Q  332 actgaacatgcttccagttttcacgtgtatgctgtgttaattcaagacatcaaagacattttgtccactacgaatttctccattcaacattgtttaaggg 431  Q
    |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  22486896 actgaacatgcttcaagtttccacgtctatgctgtgttaattcaagacatcaaagacattttgtccactacaaatttctccattcatcattgtttaaggg 22486797  T
Q  432 aagggaatcagtgtgcggacttcatggcaaagctgggcgctacctcaaacacagaataccttcatcatgccactcctccacatgacttactacctttgat 531  Q
    ||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  22486796 aagggaaccaatgtgcggacttcatggctaagctgggcgctacctcaaacactgaataccatcatcatgccactcctccacatgccttacttcctttgat 22486697  T
Q  532 caggatcgacgcaatgggaactttgtaccatagggtctaagtcctatacttttctttaatttttgttgttttt 604  Q
     |||| ||||||| ||||||||||||| | ||| |||||||||||||| |||||||   ||||||||||||||    
T  22486696 taggaccgacgcagtgggaactttgtatcctagagtctaagtcctatatttttctt---tttttgttgttttt 22486627  T

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Target: chr4 (Bit Score: 108; Significance: 6e-54; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 217 - 332
Target Start/End: Original strand, 46551141 - 46551256
Alignment:
Q  217 gtgcaatgctaaatccagcgacaatcattttcccgaaaattccacgaaccgcatttttgctttaagaaaacgtgcctaaactgctcaatcacctaaattc 316  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46551141 gtgcaatgctaaatccagcgacaatcattttcccaaaaattccacgaaccgcatttttgctttaagaaaacgtgcctaaactgctcaatcacctaaattc 46551240  T
Q  317 catatttggtggaaaa 332  Q
    || |||||||||||||    
T  46551241 cagatttggtggaaaa 46551256  T

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Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 46550925 - 46551026
Alignment:
Q  1 cttggcaaatataaacccctaaatttgaaacaaaattgtttagaattaagttacttattcataattcagaggcgtctaatggagatttggtctaacgatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46550925 cttggcaaatataaacccctaaatttgaaacaaaattgtttagaattaagttacttattcataattcagaggcgtctaatggagatttggtctaacgatg 46551024  T
Q  101 gg 102  Q
    ||    
T  46551025 gg 46551026  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 224 - 328
Target Start/End: Complemental strand, 38937566 - 38937462
Alignment:
Q  224 gctaaatccagcgacaatcattttcccgaaaattccacgaaccgcatttttgctttaagaaaacgtgcctaaactgctcaatcacctaaattccatattt 323  Q
    |||||||||||| |||||  ||||||| |||||||||||||  ||| | ||||||||| |||||||| |||||| |||||||||||||||||||  ||||    
T  38937566 gctaaatccagccacaattcttttcccaaaaattccacgaagtgcaatattgctttaataaaacgtggctaaaccgctcaatcacctaaattccggattt 38937467  T
Q  324 ggtgg 328  Q
    |||||    
T  38937466 ggtgg 38937462  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 10978012 - 10977903
Alignment:
Q  223 tgctaaatccagcgacaatcattttcccgaaaattccacgaaccgcatttttgctttaagaaaacgtgcctaaactgctcaatcacctaaattccatatt 322  Q
    |||||||||||||||||||  |||||  ||||||||||||||   || | ||||||||| ||||||||| ||||| ||||||| |   |||||||  |||    
T  10978012 tgctaaatccagcgacaattcttttcaagaaaattccacgaagtacaatattgctttaataaaacgtgcttaaaccgctcaatgaatgaaattccggatt 10977913  T
Q  323 tggtggaaaa 332  Q
    ||||||||||    
T  10977912 tggtggaaaa 10977903  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 557
Target Start/End: Complemental strand, 54089334 - 54089278
Alignment:
Q  501 ccactcctccacatgacttactacctttgatcaggatcgacgcaatgggaactttgt 557  Q
    |||||||||| |||||| | || |||||||||||||||||||| |||||||| ||||    
T  54089334 ccactcctcctcatgaccttctccctttgatcaggatcgacgccatgggaaccttgt 54089278  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 463
Target Start/End: Complemental strand, 54475468 - 54475409
Alignment:
Q  404 aatttctccattcaacattgtttaagggaagggaatcagtgtgcggacttcatggcaaag 463  Q
    |||||||||||||| |||||| | || ||||||||||| ||||| |||||| ||||||||    
T  54475468 aatttctccattcatcattgtcttagagaagggaatcaatgtgccgacttcctggcaaag 54475409  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 380 - 424
Target Start/End: Original strand, 28323816 - 28323860
Alignment:
Q  380 atcaaagacattttgtccactacgaatttctccattcaacattgt 424  Q
    |||||||||||||||| |||| | |||||||||||||| ||||||    
T  28323816 atcaaagacattttgtacacttcaaatttctccattcatcattgt 28323860  T

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Target: chr8 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 219 - 330
Target Start/End: Original strand, 4940888 - 4940999
Alignment:
Q  219 gcaatgctaaatccagcgacaatcattttcccgaaaattccacgaaccgcatttttgctttaagaaaacgtgcctaaactgctcaatcacctaaattcca 318  Q
    |||||||||||||||||| ||||  ||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||      
T  4940888 gcaatgctaaatccagcggcaattgttttcccgagaattccacgaaccgtatttttactttaagaaaacgtgcctaaactgctcaatcacctaaattctg 4940987  T
Q  319 tatttggtggaa 330  Q
     |||||||||||    
T  4940988 gatttggtggaa 4940999  T

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Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 332 - 557
Target Start/End: Original strand, 29100809 - 29101035
Alignment:
Q  332 actgaacatgcttccagttttcacgtgtatgctgtgttaattcaagacatcaaagacattttgtccactacgaatttctccattcaacattgtttaaggg 431  Q
    |||||||||| |||||  | ||| |||||| |||| |||||||||||||||||||||||| |  |||||||  || |||| |||||||||||||| || |    
T  29100809 actgaacatgtttccaactatcatgtgtatactgttttaattcaagacatcaaagacattctagccactacagatctctcaattcaacattgttttagag 29100908  T
Q  432 aagggaatcagtgtgcggacttcatggcaaagctgggcgctacctcaaacacagaataccttcatcatgccactcctccacatgacttactacc-tttga 530  Q
    |||||||||| ||||| ||||||||||| ||||| || || | ||| ||  || | ||| ||  |||  |||||||||  |||||| | || || |||||    
T  29100909 aagggaatcaatgtgctgacttcatggcgaagctaggagcaaactctaatgcaaattacttttctcacaccactcctcgtcatgaccttctcccttttga 29101008  T
Q  531 tcaggatcgacgcaatgggaactttgt 557  Q
    ||||||||||||| |||||||| ||||    
T  29101009 tcaggatcgacgccatgggaaccttgt 29101035  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 24530991 - 24531097
Alignment:
Q  359 tatgctgtgttaattcaagacatcaaagacattttgtccactacgaatttctccattcaacattgtttaagggaagggaatcagtgtgcggacttcatgg 458  Q
    |||||||| ||||| ||||| |||||||||||||| || || || || ||||||||||| |||||||| || |||||||| || ||||| ||| ||||||    
T  24530991 tatgctgttttaatccaagatatcaaagacattttatcgacaacaaacttctccattcatcattgttttagagaagggaaccaatgtgctgacctcatgg 24531090  T
Q  459 caaagct 465  Q
    |||||||    
T  24531091 caaagct 24531097  T

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Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 356 - 465
Target Start/End: Complemental strand, 49011623 - 49011514
Alignment:
Q  356 gtgtatgctgtgttaattcaagacatcaaagacattttgtccactacgaatttctccattcaacattgtttaagggaagggaatcagtgtgcggacttca 455  Q
    |||||||| || |||||||||||||||||||||||| |  |||||||  ||||||| |||||||||||||| || ||||||||||| || || |||||||    
T  49011623 gtgtatgccgtattaattcaagacatcaaagacattctagccactacagatttctcaattcaacattgttttagagaagggaatcaatgcgctgacttca 49011524  T
Q  456 tggcaaagct 465  Q
    |||| |||||    
T  49011523 tggcgaagct 49011514  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 40872671 - 40872578
Alignment:
Q  223 tgctaaatccagcgacaatcattttcccgaaaattccacgaaccgcatttttgctttaagaaaacgtgcctaaactgctcaatcacctaaattcc 317  Q
    |||||||||||||||||||  |||||||||||||||||||||  ||| |||||| |||| |||||||| |||||| |||||||||| ||||||||    
T  40872671 tgctaaatccagcgacaattcttttcccgaaaattccacgaagtgca-ttttgccttaataaaacgtggctaaaccgctcaatcacataaattcc 40872578  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 24122859 - 24122805
Alignment:
Q  219 gcaatgctaaatccagcgacaatcattttcccgaaaattccacgaaccgcatttt 273  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||    
T  24122859 gcaatgctaaatctagcgacaattattttcccaaaaattccacgaaccgcatttt 24122805  T

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Target: scaffold0041 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 93611 - 93704
Alignment:
Q  223 tgctaaatccagcgacaatcattttcccgaaaattccacgaaccgcatttttgctttaagaaaacgtgcctaaactgctcaatcacctaaattcc 317  Q
    |||||||||||||||||||  |||||||||||||||||||||  ||| |||||| |||| |||||||| |||||| |||||||||| ||||||||    
T  93611 tgctaaatccagcgacaattcttttcccgaaaattccacgaagtgca-ttttgccttaataaaacgtggctaaaccgctcaatcacataaattcc 93704  T

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Target: scaffold0472 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 223 - 313
Target Start/End: Complemental strand, 8786 - 8697
Alignment:
Q  223 tgctaaatccagcgacaatcattttcccgaaaattccacgaaccgcatttttgctttaagaaaacgtgcctaaactgctcaatcacctaaa 313  Q
    ||||| |||||||||||||| ||||| | ||||||||| |||  |||||||| || ||| |||||||| |||||| |||||||||||||||    
T  8786 tgctagatccagcgacaatc-ttttctcaaaaattccatgaagtgcatttttactataataaaacgtggctaaaccgctcaatcacctaaa 8697  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 503 - 553
Target Start/End: Complemental strand, 36834118 - 36834068
Alignment:
Q  503 actcctccacatgacttactacctttgatcaggatcgacgcaatgggaact 553  Q
    |||||||||  |||| | || ||||||||||||||||||||||||||||||    
T  36834118 actcctccaagtgacctccttcctttgatcaggatcgacgcaatgggaact 36834068  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 407 - 463
Target Start/End: Complemental strand, 14651731 - 14651675
Alignment:
Q  407 ttctccattcaacattgtttaagggaagggaatcagtgtgcggacttcatggcaaag 463  Q
    |||||||| ||||||||| | || ||||| ||||| |||||||| ||||||||||||    
T  14651731 ttctccatacaacattgtcttagagaaggaaatcaatgtgcggatttcatggcaaag 14651675  T

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