View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_102 (Length: 226)
Name: NF7337_low_102
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_102 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 7462684 - 7462813
Alignment:
| Q |
46 |
gttaagattaagtcaaactattcatttggataagattgaattctaaccaagcgggtcaccttattttgtttgttttatttttggaaatatatgcaatgct |
145 |
Q |
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| T |
7462684 |
gttaagattaagtcaaactattcatttggataagattgaattctaaccaagcgggtcaccttattttgtttgttttatttttggaaatatatgc-atact |
7462782 |
T |
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| Q |
146 |
cttctgagttattgtttgtgaatgtatatta |
176 |
Q |
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| T |
7462783 |
cttctgagttattgtttgtgaatgtatatta |
7462813 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 7447591 - 7447650
Alignment:
| Q |
78 |
agattgaattctaaccaagcgggtcaccttattttgtttgttttatttttggaaatatatgca |
140 |
Q |
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| T |
7447591 |
agattgaattctaatcaaacgggtcaccttatttc---tattttatttttggcaatatatgca |
7447650 |
T |
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