View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_104 (Length: 226)
Name: NF7337_low_104
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_104 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 4146335 - 4146110
Alignment:
| Q |
1 |
gattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggcatcaaacttaacnnnnnnntctatacatcgattcacttctcggaaagtgtg |
100 |
Q |
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| T |
4146335 |
gattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggcatcaaacttaacaaaaaaatctatacatcgattcacttctcggaaagtgtg |
4146236 |
T |
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| Q |
101 |
atatatcgtaacatttcctttgctccaacaactatttatatatacacataaagagactaaagggcttaaggattgaaaatgtaaattttgacattaaaga |
200 |
Q |
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| T |
4146235 |
atatatcgtaacatttcctttgctccaacaactatttatatatacacataaagagactaaagggcttaaggattgaaaatgtaaattttgacattaaaga |
4146136 |
T |
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| Q |
201 |
agcgtgaatgcaagcaatactcgagt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
4146135 |
agcgtgaatgcaagcaatactcgagt |
4146110 |
T |
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