View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_111 (Length: 208)
Name: NF7337_low_111
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_111 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 33250565 - 33250358
Alignment:
| Q |
1 |
ggaaaattctacaggggaactacactctcaaaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttattagaggcattagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33250565 |
ggaaaattctacaggggaactacactctcaaaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttattagaggcattagg |
33250466 |
T |
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| Q |
101 |
tgtatatctatctttttggaattcaactatattagtagtactttggtggtgttatttttggttatgacagttaacattttgcttttggaattttaacagg |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33250465 |
tgtatatctatccttttggaattcaactatattagtagtactttggtggtgttatttttggttatgacagttaacattttccttttggaattttaacagg |
33250366 |
T |
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| Q |
201 |
agagctat |
208 |
Q |
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|||||||| |
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| T |
33250365 |
agagctat |
33250358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 33270737 - 33270530
Alignment:
| Q |
1 |
ggaaaattctacaggggaactacactctcaaaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttattagaggcattagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33270737 |
ggaaaattctacaggggaactacactctcaaaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttattagaggcattagg |
33270638 |
T |
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| Q |
101 |
tgtatatctatctttttggaattcaactatattagtagtactttggtggtgttatttttggttatgacagttaacattttgcttttggaattttaacagg |
200 |
Q |
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| T |
33270637 |
tgtatatctatccttttggaattcaactatattagtagtactttggtggtgttatttttggttatgacagttaacattttccttttggaattttaacagg |
33270538 |
T |
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| Q |
201 |
agagctat |
208 |
Q |
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|||||||| |
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| T |
33270537 |
agagctat |
33270530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 33302480 - 33302406
Alignment:
| Q |
27 |
ctcaaaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttattagaggcattaggt |
101 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |
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| T |
33302480 |
ctcaaaagccttatagaattgagctagttggtgtcgtttgtgatggttatcatgcagttattagaggcattaggt |
33302406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 33310462 - 33310362
Alignment:
| Q |
1 |
ggaaaattctacaggggaactacactctcaaaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttattagaggcattagg |
100 |
Q |
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|||||||| || | ||||||||| | | | ||||||||||||||||| |||||||||||||||||||||||| |||||||| ||| |||||||||||||| |
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| T |
33310462 |
ggaaaattataaaagggaactactcacccgaaagccttacagaattgtgctagttggtgtggtttgtgatggctatcttgctgttgttagaggcattagg |
33310363 |
T |
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| Q |
101 |
t |
101 |
Q |
| |
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| T |
33310362 |
t |
33310362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 30664358 - 30664435
Alignment:
| Q |
31 |
aaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttattagaggcattaggtgtatatc |
108 |
Q |
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| T |
30664358 |
aaagcgttacaaaattaaacaagttggtgtggtttgtgacggcaatcttgcatttattagaggcattaggtgtatatc |
30664435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 30673038 - 30673115
Alignment:
| Q |
31 |
aaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttattagaggcattaggtgtatatc |
108 |
Q |
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| T |
30673038 |
aaagcgttacaaaattaaacaagttggtgtggtttgtgacggcaatcttgcatttattagaggcattaggtgtatatc |
30673115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 30627368 - 30627445
Alignment:
| Q |
31 |
aaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttattagaggcattaggtgtatatc |
108 |
Q |
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||||| ||||| |||| | | ||||||||||||||| || || |||||||| ||||||||||||||||||||||||| |
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| T |
30627368 |
aaagcgttacaaaattaaacaagttggtgtggtttgagacggcaatcttgcatttattagaggcattaggtgtatatc |
30627445 |
T |
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