View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7337_low_112 (Length: 204)
Name: NF7337_low_112
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_112 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 132; Significance: 9e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 26153384 - 26153535
Alignment:
| Q |
18 |
tgttataccttcctatgcgatgatgatatcaaatgtgaggcggtgcgaggttgacggtgatactaacctcatatgcaatgatagctatataggattctat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26153384 |
tgttataccttcctatgcgatgatgatatcaaatgtgaagcggtgcgaggttggccgtgatactaacatcatatgcaatgatagctatataggattctat |
26153483 |
T |
|
| Q |
118 |
tatgagcatatttaatttgtttaaaataattaaaatgagcccatatatagtg |
169 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26153484 |
tatgagcatatttaatttctttaaaataattaaaatgagcccatatatagtg |
26153535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 4086345 - 4086511
Alignment:
| Q |
18 |
tgttataccttcctatgcgatgatgatatcaaatgtgaggcggtgcgaggttgacggtgatactaacctcatatgcaatgatagctatataggattctat |
117 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| ||| ||| || ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4086345 |
tgttataccttcctacgcaatgatgatatcaaatatgaagcgatgtgaggttggcggtgatactaacatcatatgcaatgatagctatataggattcta- |
4086443 |
T |
|
| Q |
118 |
tatgagcatatttaatttgtttaaaataattaaaatgag-cccatatatagtgattttgtaaggcaaa |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||| |
|
|
| T |
4086444 |
tatgagcatatttaatttgtttaaaataattaaattgagccccatatatggtgattttataaggcaaa |
4086511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 86 - 184
Target Start/End: Original strand, 7755769 - 7755861
Alignment:
| Q |
86 |
tcatatgcaatgatagctatataggattctattatgagcatatttaatttgtttaaaataattaaaatgagcccatatatagtgattttgtaaggcaaa |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7755769 |
tcatatgcaatgatagctatataggattctattgtgagca------atccgtttaaaataattaaaatgagcccatatatggtgattttgtaaggcaaa |
7755861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 7755689 - 7755746
Alignment:
| Q |
21 |
tataccttcctatgcgatgatgatatcaaatgtgaggcggtgcgaggttgacggtgat |
78 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||| ||| || ||||||| ||||||| |
|
|
| T |
7755689 |
tataccttcctatgcaatgatgatatcaaatatgaagcgatgtgaggttggcggtgat |
7755746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 31 - 184
Target Start/End: Complemental strand, 43470817 - 43470675
Alignment:
| Q |
31 |
tatgcgatgatgatatcaaatgtgaggcggtgcgaggttgacggtgatactaacctcatatgcaatgatagctatataggattctattatgagcatattt |
130 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||| |||||| |||||||||||| |||||||||||||||| ||||||||||||| || |||||||||| |
|
|
| T |
43470817 |
tatgcaatgatgatatcaaatatgaagcggtg--aggttggtggtgatactaacatcatatgcaatgatagatatataggattctcttgtgagcatatta |
43470720 |
T |
|
| Q |
131 |
aatttgtttaaaataattaaaatgagcccatatatagtgattttgtaaggcaaa |
184 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
43470719 |
aatttgttta---------aaatgagcccatatatggtgattttgtaaggcaaa |
43470675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 41294328 - 41294231
Alignment:
| Q |
86 |
tcatatgcaatgatagctatataggattctattatgagcatatttaatttgtttaaaataattaaaatgagcccatatatagtgattttgtaaggcaaa |
184 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| |||||||||||||| ||||||||||||||||||||| ||| |||| |||||||| ||||||||| |
|
|
| T |
41294328 |
tcatatgcaatgatagttatataagattctattgtgagcatatttaatccgtttaaaataattaaaatgag-ccagatatggtgattttataaggcaaa |
41294231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 41294408 - 41294351
Alignment:
| Q |
21 |
tataccttcctatgcgatgatgatatcaaatgtgaggcggtgcgaggttgacggtgat |
78 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| ||| ||| || ||||||| ||||||| |
|
|
| T |
41294408 |
tataccttcgtatgcaatgatgatatcaaatatgaagcgatgtgaggttggcggtgat |
41294351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University