View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_13 (Length: 588)
Name: NF7337_low_13
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_13 |
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| [»] scaffold1452 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 17 - 571
Target Start/End: Complemental strand, 43947747 - 43947193
Alignment:
| Q |
17 |
atatcatacaatcccacttaaataaacaaacttttcacaacattccaagaacagaaaaaacaaaagcatgcagaaatagcattgaaataagaaacccact |
116 |
Q |
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| T |
43947747 |
atatcatacaatcccacttaaataaacaaacttttcacaacattccaagaacagaaaaaacaaaagcatgcagaaatagcattgaaataagaaacccact |
43947648 |
T |
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| Q |
117 |
tgtagagtgacgagtctgtcgtcaatttgaagttctttagtgacaaaatcagctccaattgttgccttatattgttgactaaacttgttgtgcacatatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43947647 |
tgtagagtgacgagtctgtcgtcaatttgaagttctttagtgacaaaatcagctccaattgttgccttatattgttgactaaacttgttgtgcacatatc |
43947548 |
T |
|
| Q |
217 |
taatttagttaagggtccacaaaaggctaaatcccaataaggaaataataactataaaaattgacctcaaacacaaccttaaaaagtcaaatcaggtgct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43947547 |
taatttagttaagggtccacaaaaggctaaatcccaataaggaaataataactataaaaattgacctcaaacacaaccttaaaaagtcaaatcaggtgct |
43947448 |
T |
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| Q |
317 |
tgaactcnnnnnnngtcaaaactttctacataagttaccataataaaaacagcatgatttgattaaggtagatccaaactaactaatattatcacttaaa |
416 |
Q |
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| T |
43947447 |
tgaacccaaaaaaagtcaaaactttctacataagttaccataataaaaacagcataatttgattaaggtagatccaaactaactaatattatcacttaaa |
43947348 |
T |
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| Q |
417 |
cattaattaacaacaattagtaactaaacagaaaatnnnnnnnttaccaaaggagttaaaaatcaaaactttatgagatgtgtttcaaagaaatgaaaac |
516 |
Q |
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| T |
43947347 |
cattaattaacaataattagtaactaaacaaaaaataaaaaaattaccaaaggagttaaaaatcaaaactttatgagatgtgtttcaaagaaatgaaaac |
43947248 |
T |
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| Q |
517 |
ccataaagattaagcatgaaattaggaggaaaccgaggaacaaggatactgattc |
571 |
Q |
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| T |
43947247 |
ccataaagattaagcatgaaattacgaggaaaccgaggaacaaggatactgattc |
43947193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1452 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold1452
Description:
Target: scaffold1452; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 681 - 791
Alignment:
| Q |
108 |
aaacccacttgtagagtgacgagtctgtcgtcaatttgaagttctttagtgacaaaatcagctccaattgttgccttatattgttgactaaacttgttgt |
207 |
Q |
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||||||||||||||||| || |||| ||| || || || | |||||| |||||||| ||||| || ||||| || |||||||| ||||| ||||| |||| |
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| T |
681 |
aaacccacttgtagagtcactagtcggtcatcgatctgcaattctttggtgacaaagtcagcaccgattgtagctttatattgctgactgaacttcttgt |
780 |
T |
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| Q |
208 |
gcacatatcta |
218 |
Q |
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| T |
781 |
gcacatatcta |
791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 16139238 - 16139157
Alignment:
| Q |
137 |
gtcaatttgaagttctttagtgacaaaatcagctccaattgttgccttatattgttgactaaacttgttgtgcacatatcta |
218 |
Q |
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||||||||| ||||| ||| |||| || |||| || ||||| || |||||| | ||||||||||| ||||||||||||||| |
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| T |
16139238 |
gtcaatttgcagttcactagggacagaaccagcaccgattgtagctttatatcggtgactaaacttcttgtgcacatatcta |
16139157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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