View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_18 (Length: 559)
Name: NF7337_low_18
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Complemental strand, 8840542 - 8840000
Alignment:
| Q |
1 |
tactgattctttccagccccagctgctgttgaatctcctcgaacgcggtccttctcgccacaatgtacacctgacaacactcactttcatatcctccgat |
100 |
Q |
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| T |
8840542 |
tactgattctttccagccccagctgctgttgaatctcctcgaacgcggtccttctcgccacaatgtacacctgacaacactcactttcatatcctccgat |
8840443 |
T |
|
| Q |
101 |
caacatctcccccacaatcttactcatacaaacaatcgcctcatcaggataaccaggaaaattcgtttcgaattcttctggttgatcctgatgatctgat |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8840442 |
caacatctcccccacaatcttgctcatacaaacaatcgcctcatcaggataaccaggaaaattcgtttcgaattcttctggttgatcctgatgatctgat |
8840343 |
T |
|
| Q |
201 |
tgcccgtcctgttgatctgacgccactt---ttcgttttgcatcaaccttttcattgatattgatatcaggattcacttcggtctggattctagaatatt |
297 |
Q |
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| T |
8840342 |
tgcccgtcctgttgatccgacaccacttgttttcgttttgcatcaaccttttcattgatattgatatcaggattcacttcggtctggattctagaatatt |
8840243 |
T |
|
| Q |
298 |
ctatcaacacgcgaaaatcttcttccaaaaacgccatcgctttctgttgaattttaccaacacgattggctattgactttcttctttcatctatggtttc |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8840242 |
ctatcaacacgcgaaaatcttcttccaaaaacgccatcgctttctgttgaattgtaccaacacgattggctattgactttcttctttcatctatggtttc |
8840143 |
T |
|
| Q |
398 |
tttttcatcatgaatcatcaacattttcttaagcttcgaaattcgatgcacagattcaagcaaccatttatctttctccataatctcttcccattttcct |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8840142 |
tttttcatcatgaatcatcaacattttcttaagcttcgaaattcgatgcacagattcaagcaaccatttatctttctccataatctcttcccattttcct |
8840043 |
T |
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| Q |
498 |
ttccgttctccagtttcattcttcaccatattctcctccacct |
540 |
Q |
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| T |
8840042 |
ttccgttctccagtttcattcttcaccatattctcctccacct |
8840000 |
T |
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