View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7337_low_19 (Length: 544)
Name: NF7337_low_19
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_19 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 28608671 - 28608146
Alignment:
| Q |
1 |
catcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggctt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
28608671 |
catcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatcttgtaagattttgtgttccagattggccactaggctt |
28608572 |
T |
|
| Q |
101 |
ctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagat |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608571 |
ctccatatgagaagcaacaagtgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagat |
28608472 |
T |
|
| Q |
201 |
tcaatgaggctaataacccctacagcctgacgagtattatgaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagct |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608471 |
tcaatgaggctaataacccctacagcttgacgagtattatgaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagct |
28608372 |
T |
|
| Q |
301 |
tgttttgctcatatctctttttgggcttgtatatgacatttatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28608371 |
tgttttgctcatatctctttttgggcttgtatatgacatttatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggt |
28608272 |
T |
|
| Q |
401 |
tggtggagtaataatctgaaatgacacattataacaaatcaaaaattaaacatttataattttgaagtgtgagttattaaaaaaggtagtaaataataat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28608271 |
tggtggagtaataatctgaaatgacacattataacaaatcaaaaattaaacatttataattttgaagtgtgagttattaaaaaagggagtaaataataat |
28608172 |
T |
|
| Q |
501 |
tttcaagtagatcaataccattctat |
526 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
28608171 |
tttcaagtagatcaataccattctat |
28608146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 438233 - 438750
Alignment:
| Q |
1 |
catcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggctt |
100 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||| ||| ||||||||||||| ||||||| |||||||||||||||| |||||||||||||| || |
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| T |
438233 |
catcatatgcctctttgaatgcttcaaaggtattggtaatgctttctaactctagctgggattgtgtaagattttgtgttccagattggccactagattt |
438332 |
T |
|
| Q |
101 |
ctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagat |
200 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| |||||| ||| |||||||||| |||||||||||||||| || |
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|
| T |
438333 |
ttccatatgagaagcaacaagggcaccaacacgtccaacgatttcaacaaggtaaaggccaaaaacatgtataggggaaattctagtggcattgaaatat |
438432 |
T |
|
| Q |
201 |
tcaatgaggctaataacccctacagcctgacgagtattatgaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagct |
300 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
438433 |
tcaatgaggctaataactcctacggcctgacgagtattgtgaacacatgctagaatcctaagctctgcatcaagtctaagcttttgtatagtctttagct |
438532 |
T |
|
| Q |
301 |
tgttttgctcatatctctttttgggcttgtatatgacatttatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggt |
400 |
Q |
| |
|
| || | |||| |||||||| |||||||||||||| |||| |||| ||||| |||||||||||||||| || |||||| || ||||||||| |||| || |
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| T |
438533 |
tattattctcaaatctctttctgggcttgtatatggcattgatgacaggagccaccactatagtcattagaagaactgcagaggttaaaacagcatatgt |
438632 |
T |
|
| Q |
401 |
tggtggagtaataatctgaaatgacacattataacaaatcaaaaattaaac-atttataattttgaagtgtgagttattaaaaaaggtagtaaataataa |
499 |
Q |
| |
|
|||||||| || ||||| || |||||| || ||||||||| ||| ||| ||||||||||||| || | |||||||||||||| |||||||||||| |
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|
| T |
438633 |
tggtggagaaagaatctacaaatacacat--tagcaaatcaaagattgaactttttataattttgacgttagcgttattaaaaaagggagtaaataataa |
438730 |
T |
|
| Q |
500 |
ttttcaagtagatcaatacc |
519 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
438731 |
ttttcaagtagatcaatacc |
438750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 13660042 - 13659600
Alignment:
| Q |
1 |
catcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggctt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| ||| |||||| ||||| |||||||| ||||||||||| | || || |||| ||||||||| |
|
|
| T |
13660042 |
catcatatgcctctccaagtgcttcaaatgtattattaatgctttcttgctctacttgggatcttgtaagattttgcgctccaggttggttactaggctt |
13659943 |
T |
|
| Q |
101 |
ctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagat |
200 |
Q |
| |
|
|||||||||| ||||||| ||||||| |||||| |||||||| |||||||||||| |||| ||| |||||||||| |||||| |||||||||||| |
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|
| T |
13659942 |
atccatatgagcggcaacaagtgcaccagtacgtcctttgagttcaataaggtaaagtgcgaaaacatgtataggggaaattctagtagcattgaaagat |
13659843 |
T |
|
| Q |
201 |
tcaatgaggctaataacccctacagcctgacgagtattatgaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagct |
300 |
Q |
| |
|
|||| |||||| ||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
13659842 |
tcaacgaggctgataacccctgtagcctggcgagcattatgaacacatgtaagaatcctaagctctgcatcaagtctaagcttttgtatagtctttagct |
13659743 |
T |
|
| Q |
301 |
tgttttgctcatatctctttttgggcttgtatatgacatttatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggt |
400 |
Q |
| |
|
|||| |||||| |||||||| | ||||| ||||||||||| || |||||| ||||||||||||||||||| ||||| | ||||||||| ||| ||| |
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| T |
13659742 |
tgttctgctcaaatctctttctcggcttatatatgacattgattgtgggaggcaccactatagtcattaaaagtactgcagcagttaaaacagcatgggt |
13659643 |
T |
|
| Q |
401 |
tggtggagtaataatctgaaatgacacattataacaaatcaaa |
443 |
Q |
| |
|
||||||| || |||||| |||||||||||||||||||||||| |
|
|
| T |
13659642 |
gggtggagaaagaatctgcaatgacacattataacaaatcaaa |
13659600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 20 - 483
Target Start/End: Complemental strand, 13652523 - 13652060
Alignment:
| Q |
20 |
tgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgagaagcaaca |
119 |
Q |
| |
|
|||||||||| |||||| ||| |||||| ||||| |||||| || ||||||||||||| || || ||| |||||||||| |||||||||| ||||||| |
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|
| T |
13652523 |
tgcttcaaatgtattattaatgctttcttgctctacctgggaactggtaagattttgtgctccaggttgcacactaggcttatccatatgagcagcaaca |
13652424 |
T |
|
| Q |
120 |
actgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataaccc |
219 |
Q |
| |
|
| |||||| |||||| |||||||| ||||||||||| ||||| ||| |||||||||| |||||||||||||||||| | ||||||| | ||||||| |
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|
| T |
13652423 |
agtgcaccggtacgtcctttgagttcaataaggtaaagtgaaaaaacatgtataggggaaattctagtggcattgaaagactgaatgaggttgataaccc |
13652324 |
T |
|
| Q |
220 |
ctacagcctgacgagtattatgaacacatgctagaatcctaagctctgcatcaagtctgagcttttgtatagtctttagcttgttttgctcatatctctt |
319 |
Q |
| |
|
||| ||| || |||||||| |||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
13652323 |
ctatagcgtggcgagtattgtgaacacatgttagaatcctaagttctgcatcaagtctaagcttttgtatagtctttagcttgttctgctcaaatctctt |
13652224 |
T |
|
| Q |
320 |
tttgggcttgtatatgacatttatgatgggagctaccactatagtcattaaaataactgctgatgttaaaacaacataggttggtggagtaataatctga |
419 |
Q |
| |
|
||||||| ||||| |||| || | | ||| ||||| ||||||||||||| || || | | ||||||| ||| || ||| || || |||||| |
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|
| T |
13652223 |
cctgggcttatatatcgcattaataacgagaggaaccacaatagtcattaaaaagaccgcagccgataaaacagcatgagtgggttcagaaaaaatctgc |
13652124 |
T |
|
| Q |
420 |
aatgacacattataacaaatcaaaaattaaacatttataattttgaagtgtgagttattaaaaa |
483 |
Q |
| |
|
||||| | ||||||||||||||||| ||||| |||||||||||| ||||| |||||||| |
|
|
| T |
13652123 |
aatgagaaattataacaaatcaaaatttaaattgatataattttgaatcttgagtaattaaaaa |
13652060 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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