View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_2 (Length: 823)
Name: NF7337_low_2
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 23434616 - 23434180
Alignment:
| Q |
1 |
tagggtggcctaactttaggttcgttcctttttagggatttaggccataacatccacacacatccttcacatcaccttaggggcagatgcagggagtggg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23434616 |
tagggtggcctaactttaggttcgttcctttttaggggtttaggccataacatccacatacatccttcacatcaccttaggggcagatgcagggaggggg |
23434517 |
T |
|
| Q |
101 |
taggcttgggtgcctccctctttcgttcactattcaaaaccaatcatcatacactaatatatggtcatgccaataatagaaattcgtggaacacatatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23434516 |
taggcttgggtgcctccctctttcgttcactattcaaaaccaatcatcatacactaatatatggtcatgccaataatagaaattcgtggaacacatatgc |
23434417 |
T |
|
| Q |
201 |
agtaatattgtcacaaattttgtcaaaataaaatagtaagatatatagatacacacacacgtagagaatatatcaaatgagtgaagaagttaatgtgaga |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23434416 |
agtaacattgtcacaaattttgtcaaaataaaatagtaagatatatagatacac--acacgtagagaatatatcaaatgagtgaagaagttaatgtgaga |
23434319 |
T |
|
| Q |
301 |
gatgagaggaatcattaataaccttcagatacacatcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatcttcatctc |
400 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23434318 |
gatgagaggaatcattaataaccatcagatacacatcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatcttcatctc |
23434219 |
T |
|
| Q |
401 |
cctcaatgacattttctccacacattcacgttccagttt |
439 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||| |
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| T |
23434218 |
cctcaatggcattttctccacacattcacgttcctgttt |
23434180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 505 - 679
Target Start/End: Complemental strand, 23434110 - 23433936
Alignment:
| Q |
505 |
acacatgattacgcattcctacttcttggttcttccctgcaatttctcccaacaagctgggatacccacaaacataataatagttatcttacaaaataac |
604 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23434110 |
acacatgattacgcattcctacttcttggttcttccctgcaatttctcccaacaagctgggatacccgcaaacataataatagttatcttacaaaataac |
23434011 |
T |
|
| Q |
605 |
tataaaacttttgattaattaaagaccctttatttctttaactctagaactagttgaatctcattatgttcttct |
679 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23434010 |
tataaaacttttgattaattaaagaccctttatttctttaactctagaactggttgaatctcattatgttcttct |
23433936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 747 - 808
Target Start/End: Complemental strand, 23433869 - 23433808
Alignment:
| Q |
747 |
cacaagcttaatctcattctattcttcggggtttttggggttagttttgtttgcttaatatt |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
23433869 |
cacaagcttaatctcattctattcttcggggtttctggggttagttttgtttgcttaatatt |
23433808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 294 - 421
Target Start/End: Complemental strand, 19638882 - 19638754
Alignment:
| Q |
294 |
tgtgagaga-tgagaggaatcattaataaccttcagatacacatcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatc |
392 |
Q |
| |
|
||||||||| |||||||||| |||||||||| |||||| | |||||||||| ||||||| |||||||||||| | | ||||||||| ||||||| |||| |
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|
| T |
19638882 |
tgtgagagagtgagaggaataattaataaccatcagatctatatcaacggttggcatttagttagtcactacagacttagtcacactgtatccctcaatc |
19638783 |
T |
|
| Q |
393 |
ttcatctccctcaatgacattttctccac |
421 |
Q |
| |
|
||||||||||| |||||| |||||||| |
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|
| T |
19638782 |
ttcatctcccttcctgacatattctccac |
19638754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 57 - 178
Target Start/End: Original strand, 23444519 - 23444645
Alignment:
| Q |
57 |
cacacatccttcacatcaccttaggggcagatgcagggag-----tgggtaggcttgggtgcctccctctttcgttcactattcaaaaccaatcatcata |
151 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| || | | ||||| |||||||||||| |||||||||||||||||||||||| | |
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| T |
23444519 |
cacacatccttcacatcaccttagggacggatgcagggacaaacatgcatggacttggccccctccctctttcattcactattcaaaaccaatcatcaca |
23444618 |
T |
|
| Q |
152 |
cactaatatatggtcatgccaataata |
178 |
Q |
| |
|
| |||||||||||||| ||||||||| |
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|
| T |
23444619 |
tattaatatatggtcataccaataata |
23444645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 262 - 421
Target Start/End: Complemental strand, 14099297 - 14099137
Alignment:
| Q |
262 |
tagagaatatatcaaatgagtgaagaagttaatgtgagaga-tgagaggaatcattaataaccttcagatacacatcaacggttagcatttaattagtca |
360 |
Q |
| |
|
||||||| ||||||| |||| | || | ||| ||||||||| |||||||||| |||||||||| || ||| | |||||||||| ||||||| ||||||| |
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|
| T |
14099297 |
tagagaacatatcaagtgagaggagtatttattgtgagagagtgagaggaataattaataaccatctgatctatatcaacggttggcatttagttagtca |
14099198 |
T |
|
| Q |
361 |
ctacaaattgagtcacactctatcccttaatcttcatctccctcaatgacattttctccac |
421 |
Q |
| |
|
||||| | | ||||||||| ||||||| ||||||||||||||| |||||| |||||||| |
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|
| T |
14099197 |
ctacagacttagtcacactgtatccctcaatcttcatctcccttcctgacatattctccac |
14099137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 304 - 421
Target Start/End: Complemental strand, 20509384 - 20509267
Alignment:
| Q |
304 |
gagaggaatcattaataaccttcagatacacatcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatcttcatctccct |
403 |
Q |
| |
|
||||||||| |||||||||| |||||| | |||||||||| ||||||| |||||||||||| | | ||||||||| ||||||| ||||||||||||||| |
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|
| T |
20509384 |
gagaggaataattaataaccatcagatctatatcaacggttggcatttagttagtcactacagacttagtcacactgtatccctcaatcttcatctccct |
20509285 |
T |
|
| Q |
404 |
caatgacattttctccac |
421 |
Q |
| |
|
|||||| |||||||| |
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|
| T |
20509284 |
tcctgacatattctccac |
20509267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 304 - 421
Target Start/End: Complemental strand, 30785644 - 30785527
Alignment:
| Q |
304 |
gagaggaatcattaataaccttcagatacacatcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatcttcatctccct |
403 |
Q |
| |
|
||||||||| |||||||||| |||||| | |||||||||| |||||| |||||||||||| | | ||||||||| ||||||| ||||||||||||||| |
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|
| T |
30785644 |
gagaggaataattaataaccatcagatctatatcaacggttgacatttagttagtcactacagacttagtcacactatatccctcaatcttcatctccct |
30785545 |
T |
|
| Q |
404 |
caatgacattttctccac |
421 |
Q |
| |
|
|||||| |||||||| |
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|
| T |
30785544 |
tcctgacatattctccac |
30785527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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