View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_21 (Length: 523)
Name: NF7337_low_21
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_21 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 5439833 - 5440356
Alignment:
| Q |
1 |
gacgtaagaacctcatactgagtcataattaagtgggactggacaataatgcataaaattcacgttt-cttgtttgtagtgccattaactaaaaagaggg |
99 |
Q |
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| T |
5439833 |
gacgtaagaacctcatactgagtcataattaagtgggattggacaataatgcataaaattcatgttttcttgtttgtagtgccattaactaaaaagaggg |
5439932 |
T |
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| Q |
100 |
tgaaagagcaatcatgttcatagtggagttgcggaccaaaagttttgtcaatgaatcatgccatgaagggagaaactcacagtcgaacacggggcaccat |
199 |
Q |
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| T |
5439933 |
tgaaagagcaatcatgttcatagtggagttgcggaccaaaagttttgtcaatgaatcatgccatgaagggagaaactcatagtcgaacacggggcaccat |
5440032 |
T |
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| Q |
200 |
aaactcctgaatgaggaaaactaacacactacccacaaaactagcttagcagagcctatacaattaaggtcatgttgtttggctaatatgcataatttag |
299 |
Q |
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| T |
5440033 |
aaactcctgaatgaggaaaactaacacactacccacaaaactagcttagcagagcctatacaattaaggtcacgttgtttggctaatatgcataatttag |
5440132 |
T |
|
| Q |
300 |
agacattcaattaaacacaaaacttattttgctatatttacatctctttaccggtcttccattttctatctgttcatgtatttcttggtgtagctnnnnn |
399 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5440133 |
agacatccaattaaacacaaaacttattttgctatatttacatatctttaccggtcttcctttttctatctgttcatgtatttcttggtgtagctaaaaa |
5440232 |
T |
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| Q |
400 |
nncgtcttgggaaatttttcggttaaaaaggaaaatatagtaaaatgagtgtgagccccgtgatttatttatttttgttgaaaagggtgcgtgatagcca |
499 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5440233 |
aacgttttgggaaatttttcggttaaaaaggaaaatatagtaaaatgagtgtgagccccgtgatttatttatttttgttgaaaagggtgcgtgatagcca |
5440332 |
T |
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| Q |
500 |
tggaggagaagaatttcattaaac |
523 |
Q |
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| T |
5440333 |
tggaggagaagaatttcattaaac |
5440356 |
T |
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