View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7337_low_22 (Length: 519)
Name: NF7337_low_22
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 12 - 483
Target Start/End: Complemental strand, 26914780 - 26914303
Alignment:
| Q |
12 |
cattctcattcttggctttgatcatcatattgacatctttgcttttctcccacttcaaaatacctaataattattttagcggagttgctgcaaaaatcca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26914780 |
cattctcattcttggctttgatcatcatattgacatctttgcttttctcccacttcaaaatacctaataattattttagcggagttgctgcaaaaatcca |
26914681 |
T |
|
| Q |
112 |
gtatcaaatcaaagggcaatgagggaaggcttttagagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagtatta |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26914680 |
gtatcaaatcaaagggcaatgagggaaggctttttgagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagtatta |
26914581 |
T |
|
| Q |
212 |
taactaggcaatggtagaatgtcaatgtcttctgtgaagcgttttcttatgacgtgacactcttatgctgttgtaggtctttcgtttaactcgccaaaga |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26914580 |
taactaggcaatggtagaatgtcaatgtcttctgtgaagcgttttcttatgacgtgacactcttatgctgttgtaggtctttcgtttaactcgccaaagg |
26914481 |
T |
|
| Q |
312 |
cagttaaaataagcgactttgttgctgctaactgtg------ataagagtcttgtatttgtggtaagcttttgcaagtctttatatacactttatagatg |
405 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26914480 |
cagttaaaataaacgactttgttgctgctaactgtgataatcataagagtcttgtatttgtggtaagcttttgcaagtctttatatacactttacagatg |
26914381 |
T |
|
| Q |
406 |
ggattatttttgttatttcttgatcgaccgttgtctgcttcttcaggttggtgcaatggctcatggaaaagttgatgc |
483 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26914380 |
ggatcatttttgttatttcttgatcgactgttgtctgcttcttcaggttgatgcaatggctcatggaaaagttgatgc |
26914303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 452 - 508
Target Start/End: Complemental strand, 26914310 - 26914254
Alignment:
| Q |
452 |
gttggtgcaatggctcatggaaaagttgatgctgactacattgatgatttcctatca |
508 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26914310 |
gttgatgcaatggctcatggaaaagttgatgctgactacattgatgatttcatatca |
26914254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 502
Target Start/End: Complemental strand, 51182519 - 51182045
Alignment:
| Q |
17 |
tcattcttggctttgatcatcatattgacatctttgcttttctcccacttcaaaatacctaataattattttagcggagttgctgcaaaaatccagtatc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
51182519 |
tcattcttggctttgatcatcatattgacatctttgcttttc-cccacttcaaaatacttaataattattttagtggagttgctgcaaaaatccagtatc |
51182421 |
T |
|
| Q |
117 |
aaatcaaagggcaatgagggaaggcttttagagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagtattataact |
216 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| | |
|
|
| T |
51182420 |
aaatcaaaggacaatgagggaaagcttttaaagttaattcaaaatcctgtgactcaacacttacccgccaactcgcttaaaattggtgag---------t |
51182330 |
T |
|
| Q |
217 |
aggcaatggtagaatgtcaatgtcttctgtgaagcgttttcttatgacgtgacactcttatgctgttgtaggtctttcgtttaactcgccaaagacagtt |
316 |
Q |
| |
|
||||||||||| ||||||||||||||| | || | ||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51182329 |
aggcaatggtacaatgtcaatgtcttc-------attcttatgatgacgtcaaactcttatgctgttgtaggtctttcatttaactcgccaaagacagtt |
51182237 |
T |
|
| Q |
317 |
aaaataagcgactttgttgctgctaactgtgataagagtcttgtatttgtggtaagcttttgcaagtctttata------tacactttatagatgggatt |
410 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
51182236 |
aaaataagagacttcgttgctgctaactgtgataagaatcttgtatttgtggtaagcttttgcaagtctttatataatattacactttacagatgggatc |
51182137 |
T |
|
| Q |
411 |
atttttgttatttcttgatcgaccgttgtctgcttcttcaggttggtgcaatggctcatggaaaagttgatgctgactacattgatgatttc |
502 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||| ||||||| || ||||||||||||||| |
|
|
| T |
51182136 |
atttttgttatttcttgattgaatgttgtctgcttcttcaggttggtgcaatgcctcatggaaatattgatgccgattacattgatgatttc |
51182045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University