View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7337_low_23 (Length: 518)

Name: NF7337_low_23
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7337_low_23
NF7337_low_23
[»] chr3 (9 HSPs)
chr3 (15-501)||(14336608-14337094)
chr3 (40-210)||(43985681-43985851)
chr3 (37-208)||(21808887-21809058)
chr3 (152-204)||(51710057-51710109)
chr3 (129-206)||(38108775-38108852)
chr3 (129-174)||(44846991-44847036)
chr3 (129-214)||(49066280-49066365)
chr3 (126-169)||(44810657-44810700)
chr3 (128-206)||(31070604-31070682)
[»] chr4 (17 HSPs)
chr4 (290-501)||(48280208-48280419)
chr4 (210-295)||(48281080-48281165)
chr4 (21-209)||(40339428-40339616)
chr4 (78-214)||(32894940-32895080)
chr4 (93-212)||(15502774-15502893)
chr4 (70-215)||(54734359-54734503)
chr4 (128-198)||(25411666-25411736)
chr4 (26-208)||(43770010-43770193)
chr4 (158-198)||(35429368-35429408)
chr4 (152-209)||(16338980-16339037)
chr4 (125-209)||(25283799-25283883)
chr4 (151-184)||(43955879-43955912)
chr4 (41-184)||(46701989-46702131)
chr4 (135-205)||(31785793-31785863)
chr4 (130-200)||(32430493-32430563)
chr4 (131-209)||(47110022-47110099)
chr4 (40-85)||(56055147-56055192)
[»] chr1 (12 HSPs)
chr1 (24-209)||(42486367-42486552)
chr1 (68-211)||(23603276-23603418)
chr1 (24-123)||(3510799-3510894)
chr1 (68-184)||(34123568-34123683)
chr1 (68-212)||(38000717-38000861)
chr1 (127-209)||(18239451-18239533)
chr1 (153-209)||(18981483-18981539)
chr1 (59-212)||(38929843-38929992)
chr1 (126-206)||(42805862-42805942)
chr1 (133-206)||(33285684-33285758)
chr1 (163-204)||(9953154-9953195)
chr1 (129-214)||(16082947-16083032)
[»] chr6 (9 HSPs)
chr6 (24-212)||(2584484-2584670)
chr6 (24-211)||(12120089-12120274)
chr6 (40-209)||(26221188-26221355)
chr6 (40-211)||(12647851-12648021)
chr6 (79-184)||(6978964-6979068)
chr6 (91-189)||(25936159-25936257)
chr6 (122-206)||(16185342-16185426)
chr6 (132-179)||(6183836-6183883)
chr6 (153-206)||(33820100-33820153)
[»] chr5 (9 HSPs)
chr5 (42-184)||(12075888-12076029)
chr5 (25-205)||(30511766-30511944)
chr5 (25-205)||(30552106-30552284)
chr5 (93-209)||(16514146-16514262)
chr5 (59-209)||(11856809-11856958)
chr5 (24-163)||(14123025-14123163)
chr5 (153-209)||(30513795-30513849)
chr5 (153-209)||(30554135-30554189)
chr5 (150-213)||(37281182-37281244)
[»] chr2 (9 HSPs)
chr2 (29-211)||(25297249-25297429)
chr2 (87-211)||(12232274-12232397)
chr2 (78-211)||(13798780-13798912)
chr2 (127-209)||(4984034-4984116)
chr2 (151-211)||(44247807-44247867)
chr2 (36-206)||(20897337-20897506)
chr2 (150-206)||(28564382-28564438)
chr2 (30-183)||(41838095-41838246)
chr2 (133-206)||(1481059-1481132)
[»] scaffold0530 (1 HSPs)
scaffold0530 (49-181)||(7548-7680)
[»] chr8 (14 HSPs)
chr8 (40-209)||(8523908-8524074)
chr8 (26-209)||(36335998-36336181)
chr8 (44-209)||(24689764-24689930)
chr8 (40-181)||(11459754-11459895)
chr8 (91-200)||(28798969-28799077)
chr8 (151-206)||(27131372-27131427)
chr8 (159-209)||(6255187-6255237)
chr8 (90-164)||(9106800-9106874)
chr8 (122-204)||(34676922-34677004)
chr8 (134-210)||(26501224-26501300)
chr8 (132-209)||(603738-603814)
chr8 (88-165)||(13076358-13076434)
chr8 (125-215)||(6253296-6253386)
chr8 (151-193)||(24689943-24689985)
[»] scaffold0258 (1 HSPs)
scaffold0258 (26-206)||(19257-19440)
[»] chr7 (6 HSPs)
chr7 (90-206)||(5617835-5617950)
chr7 (125-210)||(21166372-21166456)
chr7 (130-184)||(18791954-18792008)
chr7 (153-211)||(18792654-18792712)
chr7 (164-209)||(8476631-8476676)
chr7 (129-176)||(27542999-27543046)
[»] scaffold0079 (1 HSPs)
scaffold0079 (152-209)||(53823-53880)
[»] scaffold0174 (1 HSPs)
scaffold0174 (126-210)||(33069-33153)
[»] scaffold0584 (1 HSPs)
scaffold0584 (40-85)||(1961-2006)
[»] scaffold0446 (1 HSPs)
scaffold0446 (40-85)||(6087-6132)


Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 15 - 501
Target Start/End: Complemental strand, 14337094 - 14336608
Alignment:
Q  15 agaaacaagttgactgttgcatttttgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggttttt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14337094 agaaacaagttgactgttgcatttttgacatccaatatgtattggaaacatacgtaaatgaccaaaaaaccaagtggtagttaactgctgccgggttttt 14336995  T
Q  115 agttataaagccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtcaaaca 214  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14336994 agttataaagtcagcggtagttaactaccgttggaagtattttagtattttatttgtgtttttaggaagtttatgatgttaaaaaagcaattgtcaaaca 14336895  T
Q  215 agtttgagttatattgtagtcttggaggcctttctagcaagtatgacccaacaaagcaaacgatagaacacaaagaatccaccaactaatgcttgcattg 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14336894 agtttgagttatattgtagtcttggaggcctttctagcaagtatgacccaacaaagcaaacgatagaacacagagaatccaccaactaatgcttgcattg 14336795  T
Q  315 ttcttgctnnnnnnngttgccttgctcgataaataatcttccaaaatcttgaacacagaaatagtatctccatcatgattacataacaaagatatccaaa 414  Q
    ||||||||       ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14336794 ttcttgctaaaaaaagttgctttgctcgataaataatcttccaaaatcttgaacacagaaatagtatctccatcatgattacataacaaagatatccaaa 14336695  T
Q  415 actttcattttcatattgtaattggaaaatttcatgacttccaatattttcttcttctggtcacatggaacttggaaaagaagtttc 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14336694 actttcattttcatattgtaattggaaaatttcatgacttccaataatttcttcttctggtcacatggaacttggaaaagaagtttc 14336608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 40 - 210
Target Start/End: Complemental strand, 43985851 - 43985681
Alignment:
Q  40 tgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagcggtagttaac 139  Q
    |||||| |||||||| || |||||| | ||||||||| |||||| | || || | |||||||||||||| ||| |||||||| |||||||  ||||||||    
T  43985851 tgacattcaatatgtcttagaaacacaagtaaatgactaaaaaacccagcggcacttaactgctgccggttttctagttatagagccagcaatagttaac 43985752  T
Q  140 taccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtca 210  Q
    ||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  43985751 taccgctgggagtattttagtaatttacttgtgtttttagaaagtttatgatgttaaaacagcaattgtca 43985681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 37 - 208
Target Start/End: Original strand, 21808887 - 21809058
Alignment:
Q  37 ttttgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagcggtagtt 136  Q
    ||||||||| ||| |||| || |||||| | |||||||||||||||| | || |  |||||||||||||||| ||| ||| ||| |||||||||||||||    
T  21808887 ttttgacattcaacatgtcttagaaacacaagtaaatgaccaaaaaacctagcgtcagttaactgctgccggttttctagctatcaagccagcggtagtt 21808986  T
Q  137 aactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgt 208  Q
    |||||||| ||  |||||||| ||| ||||||||||||||||||||||||   |||| ||||||||||||||    
T  21808987 aactaccgctgagagtattttcgtactttacttgtgtttttaggaagttttaaatgtcaaaaaagcaattgt 21809058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 51710057 - 51710109
Alignment:
Q  152 tattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaa 204  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  51710057 tattttagcattttacttgtgcttttaggaagtttatgatgttaaaaaagcaa 51710109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 38108852 - 38108775
Alignment:
Q  129 cggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaatt 206  Q
    |||||||||||||||| |||| |||||| ||||||||||||||||   |||||| ||| |  ||| ||||||||||||    
T  38108852 cggtagttaactaccgctggaggtatttaagtattttacttgtgtcaataggaactttttattgtcaaaaaagcaatt 38108775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 44847036 - 44846991
Alignment:
Q  129 cggtagttaactaccgttggaagtattttagtattttacttgtgtt 174  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||    
T  44847036 cggtagttaactaccgctggaggtatttaagtattttacttgtgtt 44846991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 49066280 - 49066365
Alignment:
Q  129 cggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtcaaaca 214  Q
    |||||||||||| ||| |||| ||||||||||| |||||||| ||| |||| || |||   |||| ||||||| ||||||||||||    
T  49066280 cggtagttaactgccgctggaggtattttagtaatttacttgcgttattagaaacttttgaatgtcaaaaaagtaattgtcaaaca 49066365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 44810657 - 44810700
Alignment:
Q  126 cagcggtagttaactaccgttggaagtattttagtattttactt 169  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||    
T  44810657 cagcggtagttaactaccgctggaggtatttaagtattttactt 44810700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 31070682 - 31070604
Alignment:
Q  128 gcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaatt 206  Q
    |||||||||||||||||  | ||  |||| |||||||| | |||||| ||| ||||||| | |||||||||||||||||    
T  31070682 gcggtagttaactaccgcggaaaacatttaagtatttttcatgtgttgttaagaagttttttatgttaaaaaagcaatt 31070604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 290 - 501
Target Start/End: Complemental strand, 48280419 - 48280208
Alignment:
Q  290 aatccaccaactaatgcttgcattgttcttgctnnnnnnngttgccttgctcgataaataatcttccaaaatcttgaacacagaaatagtatctccatca 389  Q
    ||||||||||||||||||||||||||||| |||       ||||| ||| || ||||||||||||||||||||||||||||| |||||||||||||||||    
T  48280419 aatccaccaactaatgcttgcattgttctagctaaaaaaagttgctttgttctataaataatcttccaaaatcttgaacacaaaaatagtatctccatca 48280320  T
Q  390 tgattacataacaaagatatccaaaactttcattttcatattgtaattggaaaatttcatgacttccaatattttcttcttctgg---tcacatggaact 486  Q
    || ||||||||||||||| ||||||| |||| |||||||||||| |||||||||   | |  |||||||| |||||||| |||||    |||||||||||    
T  48280319 tgtttacataacaaagatgtccaaaattttccttttcatattgtgattggaaaa---cgtcgcttccaatgttttcttcctctggcgcccacatggaact 48280223  T
Q  487 tggaaaagaagtttc 501  Q
    |||||||||||||||    
T  48280222 tggaaaagaagtttc 48280208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 210 - 295
Target Start/End: Complemental strand, 48281165 - 48281080
Alignment:
Q  210 aaacaagtttgagttatattgtagtcttggaggcctttctagcaagtatgacccaacaaagcaaacgatagaacacaaagaatcca 295  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48281165 aaacaagtttgtgttatattgtagtcttggaggcctttctagcaagtatgacccaacaaagcaaacgatagaacacaaagaatcca 48281080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 40339616 - 40339428
Alignment:
Q  21 aagttgactgttgcatttttgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttt-tagtta 119  Q
    ||||||| |||||| ||| | | ||||||||| | ||||||| | | ||||||||| ||||||   || |||||||||||| || |||||||| ||||||    
T  40339616 aagttgattgttgcttttctaatatccaatatatcttggaaatacaagtaaatgactaaaaaactcagcggtagttaactgttgtcgggttttctagtta 40339517  T
Q  120 taaagccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtc 209  Q
    ||| | ||||  ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40339516 taa-gtcagcaatagttaactaccgctggaggtatgttagtattttacttgtgtttttaggaagtttatgattttaaaaaagcaattgtc 40339428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 78 - 214
Target Start/End: Original strand, 32894940 - 32895080
Alignment:
Q  78 aaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagcggtagttaactaccgttggaagtattttagtattttacttgtgtt--- 174  Q
    |||||||  ||||| ||||||| |||| ||| ||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||       
T  32894940 aaaaaattcagtggcagttaacagctgtcggttttttagttataaagtcagcggtagttaactaccgttgtgagtattttagtattttacttgtgttttt 32895039  T
Q  175 -tttaggaagtttatgatgttaaaaaagcaattgtcaaaca 214  Q
     |||||||||||||||||||||||  | |||||||||||||    
T  32895040 atttaggaagtttatgatgttaaatcaacaattgtcaaaca 32895080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 15502774 - 15502893
Alignment:
Q  93 agttaactgctgccgggtttttagttataaagccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatg 192  Q
    |||||||||||| ||||| | ||||||||||| ||||||||||||||||||| | |  ||||||||||||||||||||||||  |||||||| |   |||    
T  15502774 agttaactgctgtcgggtctctagttataaagtcagcggtagttaactaccgcttggggtattttagtattttacttgtgttactaggaagtattgaatg 15502873  T
Q  193 ttaaaaaagcaattgtcaaa 212  Q
    | ||||||||||||||||||    
T  15502874 tcaaaaaagcaattgtcaaa 15502893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 70 - 215
Target Start/End: Original strand, 54734359 - 54734503
Alignment:
Q  70 aaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagcggtagttaactaccgttggaagtattttagtattttactt 169  Q
    |||||||||||||||| |||||||||||||| | ||| | ||| ||||||||| |  ||||| |||||||||||||||     |||| |||||||||| |    
T  54734359 aaatgaccaaaaaatcgagtggtagttaactaccgccagttttctagttataa-gatagcgggagttaactaccgttgcggacatttaagtattttacat 54734457  T
Q  170 gtgtttttaggaagtttatgatgttaaaaaagcaattgtcaaacaa 215  Q
    |||||||||||||| || ||||||||||||||||||| || |||||    
T  54734458 gtgtttttaggaaggttttgatgttaaaaaagcaattttcgaacaa 54734503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 25411666 - 25411736
Alignment:
Q  128 gcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaa 198  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| |||||||||||    
T  25411666 gcggtagttaactaccgctggaggtattttagtattttacttgtgtttttagaaagtttttgatgttaaaa 25411736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 208
Target Start/End: Complemental strand, 43770193 - 43770010
Alignment:
Q  26 gactgttgcatttttgacatccaatatgtattggaaacatacgtaaatgac-caaaaaatcaagtggtagttaactgctgccgggtttttagttataaag 124  Q
    ||||||||| ||| ||||||||||||||| ||| ||||| | |||||| || ||||||| | |  ||||||||||||||| ||| ||| ||||||||| |    
T  43770193 gactgttgcttttctgacatccaatatgtcttgaaaacacaagtaaataactcaaaaaacccaacggtagttaactgctgtcggatttctagttataa-g 43770095  T
Q  125 ccagcggtagttaa-ctaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgt 208  Q
     || | |||||||| || ||  ||    ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  43770094 acaacagtagttaaactgccactgtggatattttaatattttccttgtgtttttagaaagtttatgatgttaaaaaagcaattgt 43770010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 35429408 - 35429368
Alignment:
Q  158 agtattttacttgtgtttttaggaagtttatgatgttaaaa 198  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35429408 agtattttacttgtgtttttaggaagtttatgatgttaaaa 35429368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 16338980 - 16339037
Alignment:
Q  152 tattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtc 209  Q
    |||| |||||||||| || | |||||| ||||||||||||||||||||||||||||||    
T  16338980 tattgtagtattttatttatatttttaagaagtttatgatgttaaaaaagcaattgtc 16339037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 25283799 - 25283883
Alignment:
Q  125 ccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtc 209  Q
    |||||||||||||||||||| | |  ||||||||||| |||||||||||| ||| ||| ||    ||||||||||||||||||||    
T  25283799 ccagcggtagttaactaccgctaggggtattttagtaatttacttgtgttattaagaacttctgaatgttaaaaaagcaattgtc 25283883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 43955912 - 43955879
Alignment:
Q  151 gtattttagtattttacttgtgtttttaggaagt 184  Q
    ||||||||||||||||||||||||||||||||||    
T  43955912 gtattttagtattttacttgtgtttttaggaagt 43955879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 184
Target Start/End: Complemental strand, 46702131 - 46701989
Alignment:
Q  41 gacatccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagcggtagttaact 140  Q
    ||||| |||| ||| || |||||||| ||| ||||| |||||||| || || | || ||||||| |   |||| |||||||| | |||||||||||||||    
T  46702131 gacattcaatgtgtcttagaaacataagtagatgactaaaaaatccagcggcaattcactgctgtcaatttttaagttataa-gtcagcggtagttaact 46702033  T
Q  141 accgttggaagtattttagtattttacttgtgtttttaggaagt 184  Q
    |||| ||    ||||||| |||| ||| ||||||||||||||||    
T  46702032 accgctgatgatattttaatattatacctgtgtttttaggaagt 46701989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 31785793 - 31785863
Alignment:
Q  135 ttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaat 205  Q
    ||||||||||||||| | ||||  ||||||||  |||||||||||||||||| | || ||| |||||||||    
T  31785793 ttaactaccgttggatgcatttaggtattttatatgtgtttttaggaagttttttatattagaaaagcaat 31785863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 32430563 - 32430493
Alignment:
Q  130 ggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaa 200  Q
    ||||||||||||||| |||    |||| ||||||| || |||||||||||||||||| | |||||||||||    
T  32430563 ggtagttaactaccgctggggacatttaagtatttcacatgtgtttttaggaagtttttaatgttaaaaaa 32430493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 47110099 - 47110022
Alignment:
Q  131 gtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtc 209  Q
    |||||||||||||| | ||   |||| |||||||||||||| | ||||| |||||| | ||||||||||||||||||||    
T  47110099 gtagttaactaccgctagagacatttaagtattttacttgtatctttagtaagttttt-atgttaaaaaagcaattgtc 47110022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 56055147 - 56055192
Alignment:
Q  40 tgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatc 85  Q
    |||||| |||||||| || |||||||| ||||||||||||||||||    
T  56055147 tgacattcaatatgtcttagaaacataagtaaatgaccaaaaaatc 56055192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 42486552 - 42486367
Alignment:
Q  24 ttgactgttgcatttttgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaa 123  Q
    ||||||||||| ||| ||||||||||||||| ||| ||||| | ||||||||  |||||||| || | ||||||||||||||||| ||| ||||||| ||    
T  42486552 ttgactgttgcttttctgacatccaatatgtcttgaaaacacaagtaaatgattaaaaaatccagcgatagttaactgctgccggttttctagttat-aa 42486454  T
Q  124 gccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttagg-aagtttatgatgttaaaaaagcaattgtc 209  Q
    |||||| ||||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  42486453 gccagcagtagttaactaccgcaggaggtattttagtattttacttgtgtttttaggaaagtttatgatgttaaaaaagcaaatgtc 42486367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 68 - 211
Target Start/End: Original strand, 23603276 - 23603418
Alignment:
Q  68 gtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagcggtagttaactaccgttggaagtattttagtattttac 167  Q
    ||||| ||| |||||| | || |||| ||||||||| |||| ||||||||||||| ||||| |||||||||||||||   || ||||||||  |||||||    
T  23603276 gtaaaagactaaaaaacccagcggtaattaactgcttccggttttttagttataa-gccagtggtagttaactaccgcatgaggtattttatcattttac 23603374  T
Q  168 ttgtgtttttaggaagtttatgatgttaaaaaagcaattgtcaa 211  Q
    |||||||||||||||| || | ||||||||| | ||||||||||    
T  23603375 ttgtgtttttaggaagattttcatgttaaaacaacaattgtcaa 23603418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 3510799 - 3510894
Alignment:
Q  24 ttgactgttgcatttttgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaa 123  Q
    ||||||||||| ||| ||||||||    ||| ||||||||||| |||||||||||||||||| || |||||||||||||| |||| ||||||||||||||    
T  3510799 ttgactgttgcttttctgacatcc----tgtcttggaaacataagtaaatgaccaaaaaatccagcggtagttaactgctaccggttttttagttataaa 3510894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 34123683 - 34123568
Alignment:
Q  68 gtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagcggtagttaactaccgttggaagtattttagtattttac 167  Q
    ||||||||||||||||   ||||| |||||||||||||||| ||| ||  ||||| |  || ||||||||||||||||| |  |||||||| ||||||||    
T  34123683 gtaaatgaccaaaaaaatcagtggcagttaactgctgccggttttctaactataa-gttagtggtagttaactaccgttaggggtattttaatattttac 34123585  T
Q  168 ttgtgtttttaggaagt 184  Q
    |||||||||||||||||    
T  34123584 ttgtgtttttaggaagt 34123568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 68 - 212
Target Start/End: Complemental strand, 38000861 - 38000717
Alignment:
Q  68 gtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagcggtagttaactaccgttggaagtattttagtattttac 167  Q
    ||||||||  |||||||| || || ||||| ||| || ||| ||  || ||||||||  || ||||||||||||||  | | | ||| ||||||||||||    
T  38000861 gtaaatgattaaaaaatctagcggcagttagctgttgtcggattcctaattataaagtaagtggtagttaactaccactaggaatatattagtattttac 38000762  T
Q  168 ttgtgtttttaggaagtttatgatgttaaaaaagcaattgtcaaa 212  Q
    ||| |||||||||||||||||||||||||||  ||||||||||||    
T  38000761 ttgcgtttttaggaagtttatgatgttaaaactgcaattgtcaaa 38000717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 18239533 - 18239451
Alignment:
Q  127 agcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtc 209  Q
    |||||| ||||||| |||||||  |||||||||||||||||||||||   ||||||||||   |||| |||||||||||||||    
T  18239533 agcggttgttaactgccgttgggggtattttagtattttacttgtgtcaataggaagttttctatgtcaaaaaagcaattgtc 18239451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 18981539 - 18981483
Alignment:
Q  153 attttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtc 209  Q
    |||| |||||||||||||||| |||||||||||| | |||| |||||||||||||||    
T  18981539 atttaagtattttacttgtgtctttaggaagttttttatgtcaaaaaagcaattgtc 18981483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 212
Target Start/End: Complemental strand, 38929992 - 38929843
Alignment:
Q  59 gaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagcggtagttaactaccgttggaag-tatttt 157  Q
    |||||||| |||||| || |||||||  | ||| || ||||||||||||| ||| ||||||||| | || ||| | ||||||||||||  ||| ||||||    
T  38929992 gaaacataagtaaataactaaaaaattcaatggcaggtaactgctgccggttttatagttataa-gtcaacggcaattaactaccgtt--aagatatttt 38929896  T
Q  158 agtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtcaaa 212  Q
    || |||||||||||||||  ||||| | |   |||||||||||||||||||||||    
T  38929895 aggattttacttgtgttt--aggaactattgaatgttaaaaaagcaattgtcaaa 38929843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 42805862 - 42805942
Alignment:
Q  126 cagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaatt 206  Q
    ||||||||||||||||||   ||| |||||| |||||||||| | |||||||| ||||||| |||||||| |||| |||||    
T  42805862 cagcggtagttaactaccaccggaggtatttaagtattttacatatgtttttaagaagtttttgatgttagaaaaacaatt 42805942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 33285758 - 33285684
Alignment:
Q  133 agttaactaccgttggaagtattttagtattttacttgtgtttttaggaagttt-atgatgttaaaaaagcaatt 206  Q
    |||||||| ||||||| || ||||||||||||||||||||| |||  |||||||  | |||||| ||||||||||    
T  33285758 agttaactgccgttgggagcattttagtattttacttgtgtctttgtgaagtttccttatgttagaaaagcaatt 33285684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 9953195 - 9953154
Alignment:
Q  163 tttacttgtgtttttaggaagtttatgatgttaaaaaagcaa 204  Q
    |||||||||||||||||||| ||| |||||| ||||||||||    
T  9953195 tttacttgtgtttttaggaaatttttgatgtcaaaaaagcaa 9953154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 16082947 - 16083032
Alignment:
Q  129 cggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtcaaaca 214  Q
    ||||||||||||||||||||   | |||||| | ||| | |||||| |||||| |||| |||||| | |||||||||| |||||||    
T  16082947 cggtagttaactaccgttggggtttttttagaaatttccatgtgttattaggacgtttttgatgtcagaaaagcaattttcaaaca 16083032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 24 - 212
Target Start/End: Complemental strand, 2584670 - 2584484
Alignment:
Q  24 ttgactgttgcatttttgacatccaatatgtattggaaacatacgtaaatgaccaaaaaa-tcaagtggtagttaactgctgccgggtttttagttataa 122  Q
    ||||||||||| ||| ||||||||||||| | ||||||||||| |||||||||||||||| ||||  |||||||| |||||||||| ||| ||| ||||     
T  2584670 ttgactgttgcttttctgacatccaatatatcttggaaacataagtaaatgaccaaaaaagtcaac-ggtagttatctgctgccggatttctagatatat 2584572  T
Q  123 agccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtcaaa 212  Q
    ||||| |||||||||||||| | || | |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  2584571 agccaacggtagttaactacagctg-aggtattttagtattttacttgtgtttttaggaagtttatgatgtt-aaacagcaattgtcaaa 2584484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 24 - 211
Target Start/End: Original strand, 12120089 - 12120274
Alignment:
Q  24 ttgactgttgcatttttgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaa 123  Q
    ||||| ||||| ||| ||||||||||||||| ||||||||| | | ||||||| |||||| | || ||||||||||| ||  ||| ||| |||||||||     
T  12120089 ttgaccgttgcttttctgacatccaatatgtcttggaaacacaagcaaatgactaaaaaacctagcggtagttaactcctatcggttttctagttataa- 12120187  T
Q  124 gccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtcaa 211  Q
    || |||||||||||||||||| |||  |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  12120188 gctagcggtagttaactaccgctggg-gtattttaatattttacttgtgtttttaggaagtttataatgttaaaaaagcaattatcaa 12120274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 26221355 - 26221188
Alignment:
Q  40 tgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagcggtagttaac 139  Q
    ||||||| ||||||| ||||||||| | || |||||| |||||| | || |||||||||| |||| ||| ||| ||||||||| ||||||||| ||||||    
T  26221355 tgacatcaaatatgtcttggaaacacaagtgaatgactaaaaaacctagcggtagttaacagctgtcggttttctagttataa-gccagcggttgttaac 26221257  T
Q  140 taccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtc 209  Q
    ||  | ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26221256 tattgctggga-tattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaaacaattgtc 26221188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 40 - 211
Target Start/End: Complemental strand, 12648021 - 12647851
Alignment:
Q  40 tgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagcggtagttaac 139  Q
    |||||| |||||||| || |||||| | |||||||| ||||||||  || |||| |||||||||| ||  |||||| |||||||| ||||||||||||||    
T  12648021 tgacattcaatatgttttagaaacacaagtaaatgatcaaaaaattcagcggtaattaactgctgtcgaatttttaattataaagtcagcggtagttaac 12647922  T
Q  140 ta--ccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtcaa 211  Q
    ||  |||    ||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||    
T  12647921 tataccga---aagtattttagtattttacttgtgtttttagaaagtttataatgttaaaagagcaattgtcaa 12647851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 6978964 - 6979068
Alignment:
Q  79 aaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagcggtagttaactaccgttggaagtattttagtattttacttgtgttttta 178  Q
    ||||||| || || ||| ||||| ||||| |||||||||||||| | || | ||| |||||||||| ||||  |||||||||||||||||||||||||||    
T  6978964 aaaaatccagcggcagtcaactgttgccgagtttttagttataa-gtcatccgtaattaactaccgctggagatattttagtattttacttgtgttttta 6979062  T
Q  179 ggaagt 184  Q
    | ||||    
T  6979063 gaaagt 6979068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 91 - 189
Target Start/End: Original strand, 25936159 - 25936257
Alignment:
Q  91 gtagttaactgctgccgggtttttagttataaagccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatg 189  Q
    ||||||||||||||   | ||| |||||| |||| ||||| || ||||||| |||||||  ||||||||||| ||| ||||||||||| ||||||||||    
T  25936159 gtagttaactgctgttagatttctagttaaaaagtcagcgttaattaactatcgttggagatattttagtatgttagttgtgtttttaagaagtttatg 25936257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 16185342 - 16185426
Alignment:
Q  122 aagccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaatt 206  Q
    |||||| |||||||||||||||| |||    |||||||||||| | |||||||||||| ||| || | |||||||||||||||||    
T  16185342 aagccaacggtagttaactaccgctggggacattttagtatttcatttgtgtttttagaaagctttttatgttaaaaaagcaatt 16185426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 6183836 - 6183883
Alignment:
Q  132 tagttaactaccgttggaagtattttagtattttacttgtgtttttag 179  Q
    |||||||||||| | ||| |||||||||||||||| ||||||||||||    
T  6183836 tagttaactaccatcggaggtattttagtattttatttgtgtttttag 6183883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 33820153 - 33820100
Alignment:
Q  153 attttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaatt 206  Q
    |||| |||||||||| |||| ||||||||||||| |||||||| |||| |||||    
T  33820153 atttaagtattttacatgtgcttttaggaagtttttgatgttagaaaaacaatt 33820100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 42 - 184
Target Start/End: Complemental strand, 12076029 - 12075888
Alignment:
Q  42 acatccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagcggtagttaacta 141  Q
    |||| |||| ||| || |||||| | |||||||||||||||| |||| || |||||||||||||||| ||| ||||||||| | ||||||||||||||||    
T  12076029 acattcaatgtgtcttagaaacacaagtaaatgaccaaaaaaccaagcggcagttaactgctgccggttttctagttataa-gtcagcggtagttaacta 12075931  T
Q  142 ccgttggaagtattttagtattttacttgtgtttttaggaagt 184  Q
    ||| |||| ||||||||||||||||||||||||||||||||||    
T  12075930 ccgctggaggtattttagtattttacttgtgtttttaggaagt 12075888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 30511766 - 30511944
Alignment:
Q  25 tgactgttgcatttttgacatccaatatgtattggaaacatacgtaaatgaccaaaaaat-caagtggtagttaactgctgccgggtttttagttataaa 123  Q
    |||||||||| ||| ||||||| ||||||| ||||||||| | ||||||||| ||||||| |||    ||||||||||||| ||  ||| |||||||||     
T  30511766 tgactgttgcttttctgacatctaatatgtcttggaaacacaagtaaatgactaaaaaattcaaca--tagttaactgctgtcgattttctagttataa- 30511862  T
Q  124 gccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaat 205  Q
    |||||| |||||||||||| ||| ||  ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  30511863 gccagcagtagttaactactgttagagatattttaatattttacttgtgtttttaggaagtttatgatgttaaaaaaacaat 30511944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 30552106 - 30552284
Alignment:
Q  25 tgactgttgcatttttgacatccaatatgtattggaaacatacgtaaatgaccaaaaaat-caagtggtagttaactgctgccgggtttttagttataaa 123  Q
    |||||||||| ||| ||||||| ||||||| ||||||||| | ||||||||| ||||||| |||    ||||||||||||| ||  ||| |||||||||     
T  30552106 tgactgttgcttttctgacatctaatatgtcttggaaacacaagtaaatgactaaaaaattcaaca--tagttaactgctgtcgattttctagttataa- 30552202  T
Q  124 gccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaat 205  Q
    |||||| |||||||||||| ||| ||  ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  30552203 gccagcagtagttaactactgttagagatattttaatattttacttgtgtttttaggaagtttatgatgttaaaaaaacaat 30552284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 16514262 - 16514146
Alignment:
Q  93 agttaactgctgccgggtttttagttataaagccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatg 192  Q
    ||||||||| || ||||||| ||||||||||| ||||||||||||||||||| |  | || ||||||||||||||||||||||||||||| |||  ||||    
T  16514262 agttaactgttgtcgggtttctagttataaagtcagcggtagttaactaccgctaaaggtgttttagtattttacttgtgtttttaggaatttttggatg 16514163  T
Q  193 ttaaaaaagcaattgtc 209  Q
    ||| || ||||||||||    
T  16514162 ttagaatagcaattgtc 16514146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 59 - 209
Target Start/End: Complemental strand, 11856958 - 11856809
Alignment:
Q  59 gaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagcggtagttaactaccgttggaagtatttta 158  Q
    |||||||| ||||||||  ||||||   || ||||||||| ||||| ||| |||||| |||||||| |  ||||| |||||||| ||||||| |||||||    
T  11856958 gaaacataagtaaatgattaaaaaactcagcggtagttaattgctgtcggatttttaattataaagtccacggtaattaactactgttggaa-tatttta 11856860  T
Q  159 gtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtc 209  Q
     ||  ||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  11856859 atagcttacttgtgtttttaggaagtttatgacgttaaaacagcaactgtc 11856809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 163
Target Start/End: Complemental strand, 14123163 - 14123025
Alignment:
Q  24 ttgactgttgcatttttgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaa 123  Q
    ||||| ||||| |||||||||| |||||  | ||  ||||| | ||||| ||| ||||||   ||||||||||||||| |||||| ||| |||||||||     
T  14123163 ttgacggttgcttttttgacattcaatagtttttaaaaacacatgtaaaagactaaaaaactgagtggtagttaactgttgccggttttctagttataa- 14123065  T
Q  124 gccagcggtagttaactaccgttggaagtattttagtatt 163  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  14123064 gccagcggtagttaactaccgctgggagtattttagtatt 14123025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 30513849 - 30513795
Alignment:
Q  153 attttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtc 209  Q
    ||||||||||||||  ||||||||||||||||||  |||||||||||||||||||||    
T  30513849 attttagtatttta--tgtgtttttaggaagtttcagatgttaaaaaagcaattgtc 30513795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 30554189 - 30554135
Alignment:
Q  153 attttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtc 209  Q
    ||||||||||||||  ||||||||||||||||||  |||||||||||||||||||||    
T  30554189 attttagtatttta--tgtgtttttaggaagtttcagatgttaaaaaagcaattgtc 30554135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 37281182 - 37281244
Alignment:
Q  150 agtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtcaaac 213  Q
    ||||||| | ||||||||||||||||||| ||||||| | ||||||||||| ||||| ||||||    
T  37281182 agtatttaattattttacttgtgtttttatgaagttt-ttatgttaaaaaaacaattttcaaac 37281244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 29 - 211
Target Start/End: Complemental strand, 25297429 - 25297249
Alignment:
Q  29 tgttgcatttttgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccag 128  Q
    |||||| ||| ||||||||||| | | ||||||||| | ||||||||  |||||| |||  ||||||||||||||| | | ||| ||||||||| | |||    
T  25297429 tgttgcttttctgacatccaatgtatcttggaaacacaagtaaatgattaaaaaaccaac-ggtagttaactgctgtcagttttctagttataa-gtcag 25297332  T
Q  129 cggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtcaa 211  Q
    ||||||||||||||||  |  ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  25297331 cggtagttaactaccgccgagagtattttagtattttatttgtgtttttaggaagtttttgatgttaaaaaagcaattgtcaa 25297249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 87 - 211
Target Start/End: Complemental strand, 12232397 - 12232274
Alignment:
Q  87 agtggtagttaactgctgccgggtttttagttataaagccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagttt 186  Q
    |||||||||||||| | | ||  ||||||||||||| | ||||| ||||||||||||   |  |||||||||||||||||||||| ||||||| ||||||    
T  12232397 agtggtagttaactaccgtcgattttttagttataa-gtcagcgatagttaactaccaccgagagtattttagtattttacttgtatttttagaaagttt 12232299  T
Q  187 atgatgttaaaaaagcaattgtcaa 211  Q
     ||||||||||||||||||| ||||    
T  12232298 ttgatgttaaaaaagcaattttcaa 12232274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 13798912 - 13798780
Alignment:
Q  78 aaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagcggtagttaactaccgttggaagtattttagtattttacttgtgttttt 177  Q
    |||||| | ||||| ||||||||||| || | |||  |||||||| | ||||||||||||||||| | |||  ||||||||||||||| ||| |||||||    
T  13798912 aaaaaacccagtggcagttaactgcttccagttttcgagttataa-gtcagcggtagttaactactgctgggggtattttagtattttgcttttgttttt 13798814  T
Q  178 aggaagtttatgatgttaaaaaagcaattgtcaa 211  Q
    || ||| || |||||||||||||| |||||||||    
T  13798813 agaaagattttgatgttaaaaaagaaattgtcaa 13798780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 4984034 - 4984116
Alignment:
Q  127 agcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtc 209  Q
    ||||||||||||||| |||| || | ||||||||||||||||||  |||||||||| ||| |||||||||||||| |||||||    
T  4984034 agcggtagttaactatcgtttgaggcattttagtattttacttgaatttttaggaaatttttgatgttaaaaaagtaattgtc 4984116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 44247807 - 44247867
Alignment:
Q  151 gtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtcaa 211  Q
    |||||||||||||||| | ||||||||| |||||||||||||| |||||||||||||||||    
T  44247807 gtattttagtattttaatcgtgtttttaagaagtttatgatgtgaaaaaagcaattgtcaa 44247867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 20897337 - 20897506
Alignment:
Q  36 tttttgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagcggtagt 135  Q
    ||||||||||||||||| |  | |||||| | | |||||| ||||||||| ||  |||||||| | ||| ||| ||| || |||| ||| |||| |||||    
T  20897337 tttttgacatccaatattttctagaaacacatggaaatgatcaaaaaatccagcagtagttaaatactgtcggttttctaattat-aagtcagcagtagt 20897435  T
Q  136 taactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaatt 206  Q
    | ||||||| || |   |||| |||||||||| |||||||||| ||||||| |||||||| |||| |||||    
T  20897436 ttactaccgctgaagacatttaagtattttacatgtgtttttatgaagtttttgatgttagaaaaacaatt 20897506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 28564382 - 28564438
Alignment:
Q  150 agtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaatt 206  Q
    ||||||| ||| |||||| |||||||||||||||||| ||||||||||||| |||||    
T  28564382 agtatttaagtgttttacatgtgtttttaggaagtttttgatgttaaaaaaacaatt 28564438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 41838095 - 41838246
Alignment:
Q  30 gttgcatttttgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagc 129  Q
    ||||| ||| ||||||||||||  |  |||||||| | ||||||||| |||||||  || |||||||||||   | ||  ||| ||||||||| | |||     
T  41838095 gttgcttttctgacatccaatagttcctggaaacacatgtaaatgactaaaaaattcagcggtagttaactaacgtcgt-tttctagttataa-gtcagt 41838192  T
Q  130 ggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaag 183  Q
    ||||||||| || ||||||  | |||||| ||||||||||||||||||||||||    
T  41838193 ggtagttaattatcgttgggggcattttaatattttacttgtgtttttaggaag 41838246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 1481132 - 1481059
Alignment:
Q  133 agttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaatt 206  Q
    ||||||||| ||||||  | |||| ||||||||| |||||| |||| ||||||| | |||| ||||||||||||    
T  1481132 agttaactatcgttgggggaatttaagtattttatttgtgtctttacgaagttttttatgtcaaaaaagcaatt 1481059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0530 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 49 - 181
Target Start/End: Original strand, 7548 - 7680
Alignment:
Q  49 atatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagcggtagttaactaccgttgg 148  Q
    |||||| || |||||| | |||||||||||||||| | || || ||||||||||||  |||||| ||||||||||| ||||||||||||||||||||| |    
T  7548 atatgtctttgaaacacaagtaaatgaccaaaaaacccagcggcagttaactgctgttgggtttctagttataaagtcagcggtagttaactaccgttcg 7647  T
Q  149 aagtattttagtattttacttgtgtttttagga 181  Q
      ||||||| ||||||||||||||||| |||||    
T  7648 gggtatttttgtattttacttgtgtttatagga 7680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 40 - 209
Target Start/End: Original strand, 8523908 - 8524074
Alignment:
Q  40 tgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttttagttataaagccagcggtagttaac 139  Q
    |||||| |||||||| || |||||| | |||||||| |||||||   || ||| ||||||||||| ||||||| ||| ||||||| ||| ||||||||||    
T  8523908 tgacattcaatatgtcttagaaacacaagtaaatgatcaaaaaactcagcggtggttaactgctgtcgggtttctagctataaagtcagtggtagttaac 8524007  T
Q  140 taccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtc 209  Q
    ||  |||||  || |||||||||||||||  |||||||||||||||||||||||||||| | ||||||||    
T  8524008 tattgttgg-ggtgttttagtattttact--tgtttttaggaagtttatgatgttaaaacatcaattgtc 8524074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 36336181 - 36335998
Alignment:
Q  26 gactgttgcatttttgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttt-tagttataaag 124  Q
    ||||||||| ||| ||||||||||||||| ||| ||||| |  |||||||  |||||  | ||  |||||||||| ||||||| |||| |||||||||      
T  36336181 gactgttgcttttctgacatccaatatgtcttgaaaacacaaataaatgattaaaaaccccagccgtagttaactactgccggattttctagttataagt 36336082  T
Q  125 ccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtc 209  Q
    || | ||||||||||||||  ||  | ||||||| |||||||||| | |||||||||||||||||||||||||||| ||||||||    
T  36336081 cc-gtggtagttaactaccactgagattattttaatattttacttatatttttaggaagtttatgatgttaaaaaaacaattgtc 36335998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 44 - 209
Target Start/End: Complemental strand, 24689930 - 24689764
Alignment:
Q  44 atccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggttttt-agttataaagccagcggtagttaactac 142  Q
    ||||||||||| ||||||||| | ||||||||| |||||| | |   ||| |||||||||| ||  ||||| | |||||| | | | |||||||||||||    
T  24689930 atccaatatgtcttggaaacacaagtaaatgactaaaaaacccaacagtaattaactgctgtcgacttttttaattataa-gtcggtggtagttaactac 24689832  T
Q  143 cgttggaag-tattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtc 209  Q
    ||||||| | |||||||||||||||||||||||||||| |||||| ||||||||||| | ||||||||    
T  24689831 cgttggaggatattttagtattttacttgtgtttttagaaagtttgtgatgttaaaataacaattgtc 24689764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 40 - 181
Target Start/End: Complemental strand, 11459895 - 11459754
Alignment:
Q  40 tgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatcaagtggtagttaactgctgccgggtttt-tagttataaagccagcggtagttaa 138  Q
    |||||| |||| ||| ||||||||| | |||||||||||||||| | || || |||||||||||||||| || | ||||||  | | |||||||||||||    
T  11459895 tgacattcaatgtgtcttggaaacacaagtaaatgaccaaaaaacccagcggcagttaactgctgccggtttctctagttacga-gtcagcggtagttaa 11459797  T
Q  139 ctaccgttggaagtattttagtattttacttgtgtttttagga 181  Q
    |||| | | ||  ||||||||||||||||||||||||||||||    
T  11459796 ctacagctagagatattttagtattttacttgtgtttttagga 11459754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 91 - 200
Target Start/End: Original strand, 28798969 - 28799077
Alignment:
Q  91 gtagttaactgctgccgggtttttagttataaagccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatga 190  Q
    |||||||||| | ||||| ||| ||||||||| | |||||||||||||||| |  |||  | ||||||||||||||| ||||||||||||||||||  ||    
T  28798969 gtagttaactaccgccggttttctagttataa-gtcagcggtagttaactatcactgggggcattttagtattttacatgtgtttttaggaagttttaga 28799067  T
Q  191 tgttaaaaaa 200  Q
    ||||||||||    
T  28799068 tgttaaaaaa 28799077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 27131372 - 27131427
Alignment:
Q  151 gtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaatt 206  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||    
T  27131372 gtattttagtattttacttgtgtttttaagaagtttatgatgtaaaaaaagaaatt 27131427  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 6255187 - 6255237
Alignment:
Q  159 gtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtc 209  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  6255187 gtattttacttgtgtttttaggaagtttatgatgttaaaacaacaattgtc 6255237  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 9106800 - 9106874
Alignment:
Q  90 ggtagttaactgctgccgggtttttagttataaagccagcggtagttaactaccgttggaagtattttagtattt 164  Q
    |||||| ||||| || ||||||| ||||||||||| ||||||||||||||||||| ||   ||||||||||||||    
T  9106800 ggtagtcaactgatgtcgggtttctagttataaagtcagcggtagttaactaccgctgagggtattttagtattt 9106874  T

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Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 34677004 - 34676922
Alignment:
Q  122 aagccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaa 204  Q
    |||||| |||||||||||||| ||| | || |||| |||||||||| |||||||||| ||||||| | |||||| ||||||||    
T  34677004 aagccaacggtagttaactactgttcggagcatttaagtattttacatgtgtttttatgaagttttttatgttagaaaagcaa 34676922  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 26501300 - 26501224
Alignment:
Q  134 gttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtca 210  Q
    ||||||||| |||||  ||||||| ||| ||||||| ||||||||||||||||   |||| ||||||||||||||||    
T  26501300 gttaactactgttgggggtattttcgtactttacttatgtttttaggaagttttaaatgtcaaaaaagcaattgtca 26501224  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 603738 - 603814
Alignment:
Q  132 tagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtc 209  Q
    ||||||||||||| |||  |||||| |||||||||| ||||| |||| ||||||| | |||| |||||||||||||||    
T  603738 tagttaactaccgctgggggtatttaagtattttacgtgtgtatttatgaagttt-ttatgtcaaaaaagcaattgtc 603814  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 13076434 - 13076358
Alignment:
Q  88 gtggtagttaactgctgccgggtttttagttataaagccagcggtagttaactaccgttggaagtattttagtatttt 165  Q
    ||||||||||||| ||||||| ||| ||||||||||   |||||||||||||||||||| |  |||||| ||||||||    
T  13076434 gtggtagttaactactgccggttttctagttataaa-ttagcggtagttaactaccgttaggggtatttaagtatttt 13076358  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 6253386 - 6253296
Alignment:
Q  125 ccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtcaaacaa 215  Q
    ||||||||||||||||||||||||  | |||| | ||||||||||||||  ||  |||||||   |||||| |||||||||| || |||||    
T  6253386 ccagcggtagttaactaccgttgggggcatttaattattttacttgtgtcattgtgaagttttctatgttagaaaagcaattttctaacaa 6253296  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 24689985 - 24689943
Alignment:
Q  151 gtattttagtattttacttgtgtttttaggaagtttatgatgt 193  Q
    |||||||||||||| |||||||||| |||||||||| ||||||    
T  24689985 gtattttagtatttaacttgtgtttataggaagtttctgatgt 24689943  T

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Target: scaffold0258 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 206
Target Start/End: Complemental strand, 19440 - 19257
Alignment:
Q  26 gactgttgcatttttgacatccaatatgtattggaaacatacgtaaat-----gaccaaaaaatcaagtggtagttaactgctgccgggtttttagttat 120  Q
    ||||||||| ||| ||||||||||||||| ||| ||||| | ||||||     ||| || ||||| |||||||||| ||||| | ||| ||| || ||||    
T  19440 gactgttgcttttctgacatccaatatgtcttgaaaacacaagtaaatataatgactaataaatccagtggtagttgactgcggtcggttttctatttat 19341  T
Q  121 aaagccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaatt 206  Q
    || | ||||||||||||||||||| |  || ||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||    
T  19340 aa-gtcagcggtagttaactaccgctaaaa-tattttaatattttatttgtgtttttaggaagtttatgatgttaaaaaaacaatt 19257  T

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Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 5617950 - 5617835
Alignment:
Q  90 ggtagttaactgctgccgggtttttagttataaagccagcggtagttaactaccgttggaagtattttagtatttt-acttgtgtttttaggaagtttat 188  Q
    ||||||||| | | ||||| ||| ||||||||| ||||||||||||||||||||| |||| | ||||||||||||| || ||||||||||||||||||      
T  5617950 ggtagttaattaccgccggttttctagttataa-gccagcggtagttaactaccgctgga-gcattttagtatttttacatgtgtttttaggaagtttca 5617853  T
Q  189 gatgttaaaaaagcaatt 206  Q
    ||||||||||||||||||    
T  5617852 gatgttaaaaaagcaatt 5617835  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 21166456 - 21166372
Alignment:
Q  125 ccagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtca 210  Q
    ||||||| |||||||||||| |||  |||||||||||||||||||||||||||||||||| | ||| || | ||||||||||||||    
T  21166456 ccagcggcagttaactaccgctgggggtattttagtattttacttgtgtttttaggaagtat-tgaagtcagaaaagcaattgtca 21166372  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 18792008 - 18791954
Alignment:
Q  130 ggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagt 184  Q
    ||||||||||||| ||||   |||||| |||||||||||||||||||||||||||    
T  18792008 ggtagttaactactgttgatggtatttaagtattttacttgtgtttttaggaagt 18791954  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 18792654 - 18792712
Alignment:
Q  153 attttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtcaa 211  Q
    |||| |||||||||||||||| |||| ||||||| | |||| |||||||||||||||||    
T  18792654 atttaagtattttacttgtgtctttatgaagttttttatgtcaaaaaagcaattgtcaa 18792712  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 8476676 - 8476631
Alignment:
Q  164 ttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtc 209  Q
    |||||| ||||||||||||| || ||||||||||||||||||||||    
T  8476676 ttacttatgtttttaggaagattttgatgttaaaaaagcaattgtc 8476631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 27543046 - 27542999
Alignment:
Q  129 cggtagttaactaccgttggaagtattttagtattttacttgtgtttt 176  Q
    ||||||||||||||| ||||| | |||| |||||||||||||||||||    
T  27543046 cggtagttaactaccattggaggcatttaagtattttacttgtgtttt 27542999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 53880 - 53823
Alignment:
Q  152 tattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtc 209  Q
    |||| |||||||||| || | |||||| ||||||||||||||||||||||||||||||    
T  53880 tattgtagtattttatttatatttttaagaagtttatgatgttaaaaaagcaattgtc 53823  T

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Target: scaffold0174 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 210
Target Start/End: Original strand, 33069 - 33153
Alignment:
Q  126 cagcggtagttaactaccgttggaagtattttagtattttacttgtgtttttaggaagtttatgatgttaaaaaagcaattgtca 210  Q
    |||||| |||||||||||  |||| ||||||||||||||||||| | ||| |||||| | |   |||||||||||||||||||||    
T  33069 cagcggcagttaactaccactggaggtattttagtattttacttatatttctaggaactattgaatgttaaaaaagcaattgtca 33153  T

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Target: scaffold0584 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0584
Description:

Target: scaffold0584; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 2006 - 1961
Alignment:
Q  40 tgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatc 85  Q
    |||||| |||||||| || |||||||| ||||||||||||||||||    
T  2006 tgacattcaatatgtcttagaaacataagtaaatgaccaaaaaatc 1961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 6132 - 6087
Alignment:
Q  40 tgacatccaatatgtattggaaacatacgtaaatgaccaaaaaatc 85  Q
    |||||| |||||||| || |||||||| ||||||||||||||||||    
T  6132 tgacattcaatatgtcttagaaacataagtaaatgaccaaaaaatc 6087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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