View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_24 (Length: 516)
Name: NF7337_low_24
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 484; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 4 - 502
Target Start/End: Original strand, 24852343 - 24852842
Alignment:
| Q |
4 |
agttcaaacaaaacattatcgtcatgagcaaatttagtaactgacatgagattatatagttaaattaatgaaaagctacactaggtcgaggt-gagtata |
102 |
Q |
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| T |
24852343 |
agttcaaacaaaacattatcgtcatgagcaaatttagtaactgacatgagattatatagttaaattaatgaaaagctacactaggtcgaggtcgagtata |
24852442 |
T |
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| Q |
103 |
agaaaaaattgtgtagtgacctaaagaaagaattggcataccatgaccatttcccattatgacttgttcttggccattatctaggtttttctgaatggat |
202 |
Q |
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| T |
24852443 |
agaaaaaattgtgtagtgacctaaagaaagaattggcataccatgaccatttcccattatgacttgttcttggccattatctaggtttttctgaatggat |
24852542 |
T |
|
| Q |
203 |
gtgagatgatgtgaagcaccaaaatctagataccaggttgtatcaagatgagaagcaggtgcagaggaaattgaggtcttggagctggatgagcaaatta |
302 |
Q |
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| T |
24852543 |
gtgagatgatgtgaagcaccaaaatctagataccaggttgtatcaagatgagaagcaggtgcagaggaaattgaggtcttggagctggatgagcaaatta |
24852642 |
T |
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| Q |
303 |
accattagaattatgatcaaaaagataccgaaaacgagtagcatcatatgcccaactgaagcataaatttgatactcgggatgaaaagagccacggcttc |
402 |
Q |
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| T |
24852643 |
accattagaattatgataaaaaagataccgaaaacgagtagcatcatatgcccaactgaagcataaatttgatactcgggatgaaaagagccacggcttc |
24852742 |
T |
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| Q |
403 |
aatcaaagcgaccttggccacgaccagtgttatagtgttcagacttctcgggttgtgattaccttcagcagatagataattaggttgtgtcgcatttgat |
502 |
Q |
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| T |
24852743 |
aatcaaagcgaccttggccacgaccagtgttatagtgttcatacttctcgggttgtgattaccttcagcagatagataattaggttgtgtcgcatttgat |
24852842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 266 - 502
Target Start/End: Original strand, 24848173 - 24848405
Alignment:
| Q |
266 |
gaggaaattgaggtcttggagctggatgagcaaattaaccattagaattatgatcaaaaagataccgaaaacgagtagcatcatatgcccaactgaagca |
365 |
Q |
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| T |
24848173 |
gaggaaattgagattttggagctggatgaccaaattaaccattagcagttttatcaaatagatatcgagaacgagtagcatcatgt--ccaactcaagca |
24848270 |
T |
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| Q |
366 |
taaatttgatactcgggatgaaaagagccacggcttcaatcaaagcgaccttggccacgaccagtgttatagtgttcagacttctcgggttgtgattacc |
465 |
Q |
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| T |
24848271 |
caagtttgaatttggagatgaaaagagccaggacctcaaccaaagcgacttttgccatgaccagtattgtagtgctcag--ttctcgggttgtgattacc |
24848368 |
T |
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| Q |
466 |
ttcagcagatagataattaggttgtgtcgcatttgat |
502 |
Q |
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| T |
24848369 |
ttcagcagacagataattaggttgtgtcgcatttgat |
24848405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 24851138 - 24851200
Alignment:
| Q |
121 |
acctaaagaaagaattggcataccatgaccatttcccattatgacttgttcttggccattatc |
183 |
Q |
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| T |
24851138 |
acctaaagaaggaattggcataccttgaccatttcccattatgacttgttcttggccattatc |
24851200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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