View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_29 (Length: 489)
Name: NF7337_low_29
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 24 - 470
Target Start/End: Complemental strand, 42128218 - 42127772
Alignment:
| Q |
24 |
tcctggatatggcttggcagagaattgcgtgtttgtcagttgcgcatttggagaaggcaatcctatttttgttgattggcaaggacgtgtttgttgtgga |
123 |
Q |
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| T |
42128218 |
tcctggatatggcttggcagagaattgcgtgtttgtcagttgcgcatttggagaaggcaatcctatttttgttgattggcaaggacgtgtttgttgtgga |
42128119 |
T |
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| Q |
124 |
tacattcatccagggaatgcagacgttgacatcagaatagttgatccagatggcattgaagagcttcaggaagatggaaaagaaggagaaatctggatca |
223 |
Q |
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| T |
42128118 |
tacattcatccagggaatgcagacgttgacatcagaatagttgatcccgatggcattgaagagcttcaggaagatggaaaagaaggagaaatctggatca |
42128019 |
T |
|
| Q |
224 |
gtagtccaagtgcaggaataggatactgggggaaggaagaactgagtcagtcaactttccgaaatcagcttccgaaccatcccggacgcttctacacaag |
323 |
Q |
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| T |
42128018 |
gtagtccaagtgcaggaataggatactgggggaaggaagaactgagtcagtcaactttccaaaatcagcttccgaaccatcccggacgcttctacacaag |
42127919 |
T |
|
| Q |
324 |
aactggagacttgggaaggataattgatgggaagctattcatcactggaagaatcaaggatcttatcattgttgctggaagaaacatctattcgtcagat |
423 |
Q |
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| T |
42127918 |
aactggagacttgggaaggataattgatgggaagctattcatcactggaagaatcaaggatcttatcattgttgctggaagaaacatctattcgtcagat |
42127819 |
T |
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| Q |
424 |
gttgaaaagacggtagagagttcgtctgaacttcttcgtccaggatg |
470 |
Q |
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| T |
42127818 |
gttgaaaagacggtagagagttcgtctgaacttcttcgtccaggatg |
42127772 |
T |
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Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 24 - 464
Target Start/End: Complemental strand, 24931807 - 24931367
Alignment:
| Q |
24 |
tcctggatatggcttggcagagaattgcgtgtttgtcagttgcgcatttggagaaggcaatcctatttttgttgattggcaaggacgtgtttgttgtgga |
123 |
Q |
| |
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||||||||||||||||||||| ||||| ||||| ||||| || |||||||||||||| | ||||| ||||||||||||| ||| | ||||||||||| |
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| T |
24931807 |
tcctggatatggcttggcagaaaattgtgtgttcgtcagctgtgcatttggagaaggtatgcctatcattgttgattggcagggaagagtttgttgtggg |
24931708 |
T |
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| Q |
124 |
tacattcatccagggaatgcagacgttgacatcagaatagttgatccaga---tggcattgaagagcttcaggaagatggaaaagaaggagaaatctgga |
220 |
Q |
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| T |
24931707 |
tatgttcatccggcggacacagatattgacattagaatagttgattcagaaacttgca---aagagcttcacgaagatggaaaggagggagaagtttgga |
24931611 |
T |
|
| Q |
221 |
tcagtagtccaagtgcaggaataggatactgggggaaggaagaactgagtcagtcaactttccgaaatcagcttccgaaccatcccggacgcttctacac |
320 |
Q |
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| T |
24931610 |
ttagtagtccaagtgcaggagtaggatattggggaagggaagaattgagtcagaaaactttcaggaatgaacttatgaatcgtccgggacgtaattacac |
24931511 |
T |
|
| Q |
321 |
aagaactggagacttgggaaggataattgatgggaagctattcatcactggaagaatcaaggatcttatcattgttgctggaagaaacatctattcgtca |
420 |
Q |
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||||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
24931510 |
aagaactggagacttgggacgaataatagatcagaagctattcatcactggaagaatcaaggatcttatcattgttgctggaagaaacatttactcgtct |
24931411 |
T |
|
| Q |
421 |
gatgttgaaaagacggtagagagttcgtctgaacttcttcgtcc |
464 |
Q |
| |
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|| || |||||||| | |||| ||| |||||| |||||||||| |
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| T |
24931410 |
gacgtggaaaagacaattgagacttcatctgaatttcttcgtcc |
24931367 |
T |
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