View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7337_low_38 (Length: 435)

Name: NF7337_low_38
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7337_low_38
NF7337_low_38
[»] chr3 (8 HSPs)
chr3 (1-418)||(29389418-29389860)
chr3 (1-39)||(11472259-11472297)
chr3 (1-38)||(51253682-51253719)
chr3 (1-41)||(10872681-10872721)
chr3 (1-41)||(22496960-22497000)
chr3 (1-41)||(27224589-27224629)
chr3 (1-41)||(48191724-48191764)
chr3 (11-39)||(51060764-51060792)
[»] chr6 (4 HSPs)
chr6 (1-46)||(34170082-34170127)
chr6 (1-41)||(34792465-34792505)
chr6 (1-39)||(15517181-15517219)
chr6 (1-41)||(18886317-18886357)
[»] chr7 (5 HSPs)
chr7 (1-41)||(4089138-4089178)
chr7 (6-40)||(21586824-21586858)
chr7 (4-41)||(3882816-3882853)
chr7 (4-41)||(6803467-6803504)
chr7 (1-41)||(27330599-27330639)
[»] chr5 (6 HSPs)
chr5 (1-41)||(18652856-18652896)
chr5 (1-41)||(37067621-37067661)
chr5 (1-41)||(43438346-43438386)
chr5 (2-41)||(43117395-43117434)
chr5 (4-41)||(15549419-15549456)
chr5 (1-41)||(36136254-36136294)
[»] chr4 (9 HSPs)
chr4 (1-41)||(55936078-55936118)
chr4 (1-41)||(12672536-12672576)
chr4 (1-41)||(21142099-21142139)
chr4 (1-41)||(34616224-34616264)
chr4 (4-40)||(36786160-36786196)
chr4 (1-41)||(39160905-39160945)
chr4 (1-41)||(48402502-48402542)
chr4 (1-41)||(48603681-48603721)
chr4 (1-41)||(52914089-52914129)
[»] chr2 (8 HSPs)
chr2 (4-52)||(19951539-19951587)
chr2 (1-39)||(15916744-15916782)
chr2 (1-39)||(38181771-38181809)
chr2 (1-41)||(2544360-2544400)
chr2 (1-41)||(3121431-3121471)
chr2 (2-38)||(8383197-8383233)
chr2 (1-41)||(22582875-22582915)
chr2 (1-41)||(41056897-41056937)
[»] scaffold0065 (1 HSPs)
scaffold0065 (1-39)||(36945-36983)
[»] chr8 (3 HSPs)
chr8 (1-39)||(10335233-10335271)
chr8 (4-41)||(41753852-41753889)
chr8 (4-41)||(45045471-45045508)
[»] scaffold1476 (1 HSPs)
scaffold1476 (1-41)||(750-790)
[»] scaffold0149 (1 HSPs)
scaffold0149 (1-41)||(24697-24737)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-41)||(145977-146017)
[»] chr1 (5 HSPs)
chr1 (1-41)||(18353581-18353621)
chr1 (1-41)||(34953905-34953945)
chr1 (1-41)||(46412712-46412752)
chr1 (1-41)||(46906870-46906910)
chr1 (1-41)||(50550210-50550250)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 29389418 - 29389860
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagttaatgaatgatttatactccaaaacaaaa------aatcacccagcctactctgagaag 94  Q
    |||||||| ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||      ||||||||||||||||||||||||    
T  29389418 taatgaatagatctaaaatattgatttttgcttataatagtaaatgaataatttatactccaaaacaaaacaaaaaaatcacccagcctactctgagaag 29389517  T
Q  95 ttaggatatacagtgtgcatgcatataatagtcctctnnnnnnnntagttacctttagctcgattagcttaatgtagcaatcaaaacagcctatttggtt 194  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29389518 ttaggatatacagtgtgcatgcatataatagtcctctaaaaaaaatagttacctt-agctcgattagcttaatgtagcaatcaaaacagcctatttggtt 29389616  T
Q  195 gtc--------------------aaaaaagagtagttacaaaatgttagatatatatacaagtttgtcggacagattttcaaacgcatgcattcatgtta 274  Q
    |||                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29389617 gtcttttacgaacactatgttccaaaaaagagtagttacaaaatgttagatatatatacaagtttgtcggacagattttcaaacgcatgcattcatgtta 29389716  T
Q  275 ggaaacaaaacatgatgtgtgagctgttaatttatagtatatttaaaatgcaagtaaaacaaaagcgttatacatagaacaaaataagcaaatggtttat 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||    
T  29389717 ggaaacaaaacatgatgtgtgagctgttaatttatagtatatttaaaatgcaagtaaaacaaaaaccttatacattgaacaaaataagcaaatggtttat 29389816  T
Q  375 attaaactatgggatttaaattcgagacaaaaatacgttgctag 418  Q
    | ||||||||||||||||||||||||||||||||||||||||||    
T  29389817 agtaaactatgggatttaaattcgagacaaaaatacgttgctag 29389860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 11472297 - 11472259
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataata 39  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  11472297 taatgaatgtatctaaaatattgatttttgcttataata 11472259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 51253719 - 51253682
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataat 38  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  51253719 taataaatggatttaaaatattgatttttgtttataat 51253682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10872721 - 10872681
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| || ||||||||||||||||| ||||||||||    
T  10872721 taatgaatgaatttaaaatattgatttttgcttataatagt 10872681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22497000 - 22496960
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| |||||||||||| ||||||| ||||||||||    
T  22497000 taatgaatgaatctaaaatattaatttttgcttataatagt 22496960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27224629 - 27224589
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||  ||||||||| |||||||||||||||||||||    
T  27224629 taatgaataaatctaaaatgttgatttttgtttataatagt 27224589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 48191764 - 48191724
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| ||||||||| || ||||||||||||||||||    
T  48191764 taatgaatgaatctaaaatgttaatttttgtttataatagt 48191724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 51060764 - 51060792
Alignment:
Q  11 atctaaaatattgatttttgtttataata 39  Q
    |||||||||||||||||||||||||||||    
T  51060764 atctaaaatattgatttttgtttataata 51060792  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 34170127 - 34170082
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagttaatg 46  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  34170127 taatgaatgaatctaaaatgttgatttttgtttataatagtgaatg 34170082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34792505 - 34792465
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| |||||||||||||||||||||||||| ||||    
T  34792505 taatgaatgaatctaaaatattgatttttgtttatagtagt 34792465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 15517181 - 15517219
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataata 39  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  15517181 taatgaatgaatctaaaatattgatttttgcttataata 15517219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18886357 - 18886317
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| |||||||||||| ||||||| ||||||||||    
T  18886357 taatgaatgaatctaaaatattaatttttgcttataatagt 18886317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 4089178 - 4089138
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  4089178 taatgaatgaatataaaatattgatttttgtttataatagt 4089138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 21586858 - 21586824
Alignment:
Q  6 aatggatctaaaatattgatttttgtttataatag 40  Q
    |||| ||||||||||||||||||||||||||||||    
T  21586858 aatgaatctaaaatattgatttttgtttataatag 21586824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 3882853 - 3882816
Alignment:
Q  4 tgaatggatctaaaatattgatttttgtttataatagt 41  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  3882853 tgaatgaatctaaaatattaatttttgtttataatagt 3882816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 6803467 - 6803504
Alignment:
Q  4 tgaatggatctaaaatattgatttttgtttataatagt 41  Q
    |||||| || ||||||||||||||||||||||||||||    
T  6803467 tgaatgaatttaaaatattgatttttgtttataatagt 6803504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 27330599 - 27330639
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| |||||||||||| |||||||| |||||||||    
T  27330599 taatgaatgaatctaaaatattaatttttgtgtataatagt 27330639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18652856 - 18652896
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| ||||||||| |||||||||||||||||||||    
T  18652856 taatgaatgaatctaaaatgttgatttttgtttataatagt 18652896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37067661 - 37067621
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  37067661 taatgaatgaatctaaaatattaatttttgtttataatagt 37067621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 43438346 - 43438386
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  43438346 taatgaatgaatctaaaatattaatttttgtttataatagt 43438386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 43117434 - 43117395
Alignment:
Q  2 aatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    |||||||| |||||||||||||||||||| ||||||||||    
T  43117434 aatgaatgaatctaaaatattgatttttgcttataatagt 43117395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 15549419 - 15549456
Alignment:
Q  4 tgaatggatctaaaatattgatttttgtttataatagt 41  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  15549419 tgaatgaatctaaaatgttgatttttgtttataatagt 15549456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36136294 - 36136254
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| |||||||||||| ||||||||||| ||||||    
T  36136294 taatgaatgaatctaaaatattaatttttgtttaaaatagt 36136254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 55936078 - 55936118
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  55936078 taatgaatgaatctaaaatattgatttttgcttataatagt 55936118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12672536 - 12672576
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||  ||||||||||||||||||| |||||||||||    
T  12672536 taatgaataaatctaaaatattgatttttctttataatagt 12672576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 21142139 - 21142099
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||| ||| ||||||||| |||||||||||||||||||||    
T  21142139 taatgcatgaatctaaaatgttgatttttgtttataatagt 21142099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34616264 - 34616224
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| ||||||||| | |||||||||||||||||||    
T  34616264 taatgaatgaatctaaaatgtagatttttgtttataatagt 34616224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 36786196 - 36786160
Alignment:
Q  4 tgaatggatctaaaatattgatttttgtttataatag 40  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  36786196 tgaatgaatctaaaatgttgatttttgtttataatag 36786160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39160905 - 39160945
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| ||||||||| | |||||||||||||||||||    
T  39160905 taatgaatgaatctaaaatgtagatttttgtttataatagt 39160945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 48402502 - 48402542
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| ||||||||||| |||||||| ||||||||||    
T  48402502 taatgaatgaatctaaaatatagatttttgcttataatagt 48402542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 48603681 - 48603721
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| ||||||||| |||||||||||||| ||||||    
T  48603681 taatgaatgaatctaaaatgttgatttttgtttacaatagt 48603721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 52914089 - 52914129
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| |||||||||||| ||||||| ||||||||||    
T  52914089 taatgaatgaatctaaaatattaatttttgcttataatagt 52914129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 19951539 - 19951587
Alignment:
Q  4 tgaatggatctaaaatattgatttttgtttataatagttaatgaatgat 52  Q
    |||||| || |||||||||||||||||||||||||||| | ||||||||    
T  19951539 tgaatgaatataaaatattgatttttgtttataatagtaattgaatgat 19951587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 15916782 - 15916744
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataata 39  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  15916782 taatgaatgaatctaaaatattgatttttgcttataata 15916744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 38181809 - 38181771
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataata 39  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  38181809 taatgaatgaatctaaaatattgatttttgcttataata 38181771  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2544400 - 2544360
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| |||||||| ||| ||||||||||||||||||    
T  2544400 taatgaatgaatctaaaaaattaatttttgtttataatagt 2544360  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3121471 - 3121431
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    |||| |||| |||||||||||||||||||| ||||||||||    
T  3121471 taataaatgaatctaaaatattgatttttgcttataatagt 3121431  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 8383233 - 8383197
Alignment:
Q  2 aatgaatggatctaaaatattgatttttgtttataat 38  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  8383233 aatgaatgaatctaaaatatagatttttgtttataat 8383197  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22582915 - 22582875
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| |||||||||||| ||||| ||||||||||||    
T  22582915 taatgaatgaatctaaaatattaattttagtttataatagt 22582875  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41056937 - 41056897
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| |||||||| ||||||||||| ||||||||||    
T  41056937 taatgaatgtatctaaaacattgatttttgcttataatagt 41056897  T

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Target: scaffold0065 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 36945 - 36983
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataata 39  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  36945 taatgaatgaatctaaaatgttgatttttgtttataata 36983  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 10335233 - 10335271
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataata 39  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  10335233 taataaatgaatctaaaatattgatttttgtttataata 10335271  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 41753852 - 41753889
Alignment:
Q  4 tgaatggatctaaaatattgatttttgtttataatagt 41  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  41753852 tgaatgaatctaaaatattaatttttgtttataatagt 41753889  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 45045471 - 45045508
Alignment:
Q  4 tgaatggatctaaaatattgatttttgtttataatagt 41  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  45045471 tgaatgaatctaaaatatagatttttgtttataatagt 45045508  T

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Target: scaffold1476 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 750 - 790
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| |||||||||||| ||||| ||||||||||||    
T  750 taatgaatgaatctaaaatattaattttagtttataatagt 790  T

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Target: scaffold0149 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24697 - 24737
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| |||||||||||| ||||||| ||||||||||    
T  24697 taatgaatgaatctaaaatattaatttttgcttataatagt 24737  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 146017 - 145977
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| |||||||||  ||||||||||||||||||||    
T  146017 taatgaatgaatctaaaatgatgatttttgtttataatagt 145977  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18353621 - 18353581
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||||||||||||| |||||||||  ||||||||||    
T  18353621 taatgaatggatctaaaatgttgatttttacttataatagt 18353581  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34953945 - 34953905
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| || ||||||||||||||||| ||||||||||    
T  34953945 taatgaatgaatttaaaatattgatttttgcttataatagt 34953905  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 46412752 - 46412712
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| |||||||||||| ||||||| ||||||||||    
T  46412752 taatgaatgaatctaaaatattaatttttgcttataatagt 46412712  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 46906910 - 46906870
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| ||||||||||| |||||||| ||||||||||    
T  46906910 taatgaatgaatctaaaatatagatttttgcttataatagt 46906870  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 50550210 - 50550250
Alignment:
Q  1 taatgaatggatctaaaatattgatttttgtttataatagt 41  Q
    ||||||||| ||||||||| ||||||||| |||||||||||    
T  50550210 taatgaatgaatctaaaatgttgatttttctttataatagt 50550250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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