View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_42 (Length: 424)
Name: NF7337_low_42
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 75 - 405
Target Start/End: Complemental strand, 2601276 - 2600943
Alignment:
| Q |
75 |
gttactttttaattataatttctatcattagaaggtatgtttagtatat--ttttcaggtgtaattgttgatatataatatgtacatgtgttcctgtcat |
172 |
Q |
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| T |
2601276 |
gttactttttaattcaaatttctatcattagaaggtatatttagtatatatttttcaggtgtaattgttgatatataatatgtacatatgttcctgttat |
2601177 |
T |
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| Q |
173 |
atacaaaatatcccaggttcaatccctgctactaacagttctccctcccccttacaagctaataactaacatttgtctgtcaga--agnnnnnnnnntat |
270 |
Q |
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| T |
2601176 |
atgtaaaatatccaaggttcaatccctgctaccaacagttctccctcccccttacaagctaataactaacatttgtctgtcagacgaagaaaaaaaatat |
2601077 |
T |
|
| Q |
271 |
agtatgtacatattttgtaatgtctatgctttttattttgcatattggaaattgttattgtatctgcatgtgctctgtataatcattgaataagaggagg |
370 |
Q |
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| T |
2601076 |
agtatgtacatattttgtaatg-ctatgctttttgttttgcatattgaaaattgttattgtatctgcatgtgttctgtataatcattgaataagaggagg |
2600978 |
T |
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| Q |
371 |
gaaagtgagtaaatccatcaaaatcttgaagtatc |
405 |
Q |
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| T |
2600977 |
gaaagtgagtaaatccatcaaaatcttgaagtatc |
2600943 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 53519937 - 53519996
Alignment:
| Q |
188 |
ggttcaatccctgctactaacagttctccctcccccttacaagctaataactaacatttg |
247 |
Q |
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| T |
53519937 |
ggttcaatccctgctactaacattttcccctccccctaacaaactaattactagcatttg |
53519996 |
T |
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