View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7337_low_43 (Length: 418)
Name: NF7337_low_43
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_43 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 28506907 - 28507308
Alignment:
| Q |
1 |
cagtgtttcaaaagacttgtcaggtggctcaacaagtcattaacatatttatcttgtctttccatattgacaaacaagtccttcatgttcttaatatttt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28506907 |
cagtgtttcaaaagacttgtaaggtggctcaacaagttattaacatatttatcttgtctttcaatattgacaaacaagtccttcatgttcttaatatttt |
28507006 |
T |
|
| Q |
101 |
ctctatagatcattccctcttcttcaaccacaatcagcctaattgagtgagcaactgaatcacttgtgaaagacccatctctctcatctctaggcactga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28507007 |
ctctatagatcattccctcttcttcaaccacaatcagcctaattgagtgagcaaccgaatcacttgtgaaagacccatctctctcatctctaggcactga |
28507106 |
T |
|
| Q |
201 |
gtaccccatcttcttttcctccaacactcttgcatttattccttgatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggcctctacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
28507107 |
gtaccccatcttcttttcctccaacactcttgcatttattccttgatctgaaagatacgtcaacaacacaagtggcttctcatgttgaactgcctctacc |
28507206 |
T |
|
| Q |
301 |
accgatgtccaccctgcatgagtcaagaatccaccaactgctatgtgacctaatatcttcatttgtgggacccaatcagtgcataccactccacgtcctt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28507207 |
accgatgtccaccctgcatgagtcaagaatccaccaactgccatgtgacctaatatcttcatttgtgggacccaatcagtgcataccactccacgtcctt |
28507306 |
T |
|
| Q |
401 |
tg |
402 |
Q |
| |
|
|| |
|
|
| T |
28507307 |
tg |
28507308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 41 - 402
Target Start/End: Original strand, 28494401 - 28494762
Alignment:
| Q |
41 |
taacatatttatcttgtctttccatattgacaaacaagtccttcatgttcttaatattttctctatagatcattccctcttcttcaaccacaatcagcct |
140 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| || ||||||||| |||||||||||||||||| || | ||| |
|
|
| T |
28494401 |
taacatatctatcttgtctttcaggattgacaaacaaatccttcatgttcttaatattatccctatagatccttccctcttcttcaaccataactaacct |
28494500 |
T |
|
| Q |
141 |
aattgagtgagcaactgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttatt |
240 |
Q |
| |
|
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
28494501 |
aatcgagtgagccaccatatcacttgtgaaagacccatctctctcatctctaggcactgagtatcccatcttcttttcttccaacattcttgcatttatt |
28494600 |
T |
|
| Q |
241 |
ccttgatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactg |
340 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28494601 |
ccttgatctgcaagacacgttaacaacacaagtggcttctcatgttgaactgcttctaccaccgatgtccaccctgcatgagtcaagaatccaccaactg |
28494700 |
T |
|
| Q |
341 |
ctatgtgacctaatatcttcatttgtgggacccaatcagtgcataccactccacgtcctttg |
402 |
Q |
| |
|
| | ||| | ||||||||||||||||||| |||| ||||||||||||||||||||| ||||| |
|
|
| T |
28494701 |
ccacgtggcttaatatcttcatttgtggggcccattcagtgcataccactccacgtactttg |
28494762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 45 - 402
Target Start/End: Original strand, 28491086 - 28491443
Alignment:
| Q |
45 |
atatttatcttgtctttccatattgacaaacaagtccttcatgttcttaatattttctctatagatcattccctcttcttcaaccacaatcagcctaatt |
144 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||| | ||||||||||| ||||| ||| | || |||||||||| || || || |||||| |
|
|
| T |
28491086 |
atatctatcttgtctttcaatattgacaaacaagtccttcacctctttaatattttccctatatatcctcccttcttcttcaagcataactagtctaatt |
28491185 |
T |
|
| Q |
145 |
gagtgagcaactgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattcctt |
244 |
Q |
| |
|
| | |||| ||||| ||||||||||| ||||||||| ||||||||||||||| | ||| ||||||||||||| |||||||| | ||||||||||| | |
|
|
| T |
28491186 |
gtgcgagccactgagtcacttgtgaatgacccatcttgctcatctctaggcaccgtgtatgccatcttcttttcttccaacaccttcgcatttattccct |
28491285 |
T |
|
| Q |
245 |
gatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgctat |
344 |
Q |
| |
|
| ||| ||||| | |||| |||||||||||||||||| || ||||| || || ||||| |||||||| ||||| |||| ||||| |||||| ||| || |
|
|
| T |
28491286 |
ggtctacaagaaatgtcatcaacacaagtggcttctcgttttgaactgcttccaccactgatgtccaacctgcgtgagaaaagaacacaccaattgccat |
28491385 |
T |
|
| Q |
345 |
gtgacctaatatcttcatttgtgggacccaatcagtgcataccactccacgtcctttg |
402 |
Q |
| |
|
||| ||||||||||||||||| || |||||||||||||||| ||||| || |||||| |
|
|
| T |
28491386 |
gtgccctaatatcttcatttgcggagcccaatcagtgcatacaactccgcgccctttg |
28491443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University