View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7337_low_45 (Length: 410)

Name: NF7337_low_45
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7337_low_45
NF7337_low_45
[»] scaffold0024 (2 HSPs)
scaffold0024 (1-129)||(64169-64298)
scaffold0024 (284-391)||(64300-64407)
[»] chr7 (3 HSPs)
chr7 (20-188)||(16088420-16088589)
chr7 (20-169)||(20146710-20146859)
chr7 (23-90)||(15011078-15011144)
[»] chr8 (6 HSPs)
chr8 (27-188)||(14400321-14400485)
chr8 (20-153)||(17124335-17124469)
chr8 (20-69)||(23538953-23539001)
chr8 (28-135)||(16227689-16227794)
chr8 (131-188)||(21675582-21675640)
chr8 (131-188)||(17984607-17984664)
[»] chr6 (1 HSPs)
chr6 (20-188)||(16165863-16166032)
[»] chr3 (2 HSPs)
chr3 (20-172)||(40355363-40355518)
chr3 (23-79)||(38278667-38278720)
[»] scaffold0417 (1 HSPs)
scaffold0417 (132-188)||(1793-1849)
[»] chr4 (1 HSPs)
chr4 (21-95)||(19855792-19855864)


Alignment Details
Target: scaffold0024 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 64169 - 64298
Alignment:
Q  1 atctcaacatcaacaaact-aatctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctcaatctcaacatagtgagaggt 99  Q
    ||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  64169 atctcaacatcaacaaacttaatctccaaagtagtcatgtcacatctaatcataatacatcatcaaaatataaaatctcaatctcaacatactgagaggt 64268  T
Q  100 aaatctcataaatcataaacaaaataacaa 129  Q
    ||||||||||||||||||||||||||||||    
T  64269 aaatctcataaatcataaacaaaataacaa 64298  T

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Target: scaffold0024; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 284 - 391
Target Start/End: Original strand, 64300 - 64407
Alignment:
Q  284 catgcgtgacattttaatatcgagaaaactgaattagacatgtcagattcgtctgtttcctttccctcttcacttctgtacgtaaatctaaatttcttaa 383  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  64300 catgtgtgacattttaatatcgagaaaactgaattagacatgtcagattcgtctatttcctttccctcttcacttctgtacgtaaatctaaatttcttaa 64399  T
Q  384 tttaaaac 391  Q
    ||||||||    
T  64400 tttaaaac 64407  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 16088420 - 16088589
Alignment:
Q  20 aatctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctc-aatctcaacatagtgagaggtaaatctcataaa-tcataa 117  Q
    ||||||||||||| ||||| |||||||  || |||||||||| |||| ||   |||||| |||||||||||| |||| ||||||||||||||  ||||||    
T  16088420 aatctccaaagtatccatgccacatatc-tcgtaatacatcaccaaatta---aatctccaatctcaacatactgagtggtaaatctcataaggtcataa 16088515  T
Q  118 a-ca-aaataacaacagacagacaccctaatcagagccggacactaagactccaaaa-caagaaacgaggtagc 188  Q
    | || ||||| ||||||||||||||||||||||||||  |||||||||||||||||| ||| | ||||||||||    
T  16088516 aacataaatatcaacagacagacaccctaatcagagcgtgacactaagactccaaaatcaaaagacgaggtagc 16088589  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 20146710 - 20146859
Alignment:
Q  20 aatctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctcaatctcaacatagtgagaggtaaatctcat-aaatcat-aa 117  Q
    |||||||||| |||||||| |||||||| ||||||||||| | ||||| |||||   |||||||||||||| |||| | ||||| |||| || |||| ||    
T  20146710 aatctccaaattagccatgccacatata-tcataatacatta-caaaa-ataaatcttcaatctcaacatactgagtgataaatttcatgaagtcataaa 20146806  T
Q  118 aca-aaataacaacagacagacaccctaatcagagccggacactaagactcca 169  Q
    ||| ||||||||| | ||||||| |||||||| |||| |||||||| ||||||    
T  20146807 acataaataacaaaacacagacatcctaatcaaagcccgacactaatactcca 20146859  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 15011144 - 15011078
Alignment:
Q  23 ctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctcaatctcaacata 90  Q
    ||||||| |||||||||||||| | |||||||||||||| |||| |||||| ||  ||||||||||||    
T  15011144 ctccaaaatagccatgtcacatgtcatcataatacatcaccaaagtataaactc-aaatctcaacata 15011078  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 188
Target Start/End: Complemental strand, 14400485 - 14400321
Alignment:
Q  27 aaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctc--aatctcaacatagtgagaggtaaatctcataaa-tcataaaca--- 120  Q
    ||||||||||||||||||||  ||||||||||||| |||||||   ||||||  |||||||||| | |||| | ||||||||||||  | ||||| |       
T  14400485 aaagtagccatgtcacatatc-tcataatacatcaccaaaata---aatctccaaatctcaacaaattgagtgataaatctcataatgtgataaaaacat 14400390  T
Q  121 aaataacaacagacagacaccctaatcagagccggacactaagactccaaaac-aagaaacgaggtagc 188  Q
    ||| ||||||||||| ||| | ||||||||||| | ||||||||||||||| | |||||||||||||||    
T  14400389 aaaaaacaacagacatacatcataatcagagcccggcactaagactccaaagcaaagaaacgaggtagc 14400321  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 17124335 - 17124469
Alignment:
Q  20 aatctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctc--aatctcaacatagtgagaggtaaatctcataaa-tcat- 115  Q
    ||||||||||||||||||| ||||||| ||||| |||||||| ||||||   |||||||  |||||||||| | |||| | ||||||||||||| ||||     
T  17124335 aatctccaaagtagccatgccacatat-atcatcatacatcaccaaaat---aaatctccaaatctcaacaaactgagtgataaatctcataaagtcata 17124430  T
Q  116 aaaca-aaataacaacagacagacaccctaatcagagcc 153  Q
    ||||| || |||||| ||||||||| |||||||||||||    
T  17124431 aaacataactaacaaaagacagacatcctaatcagagcc 17124469  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 23538953 - 23539001
Alignment:
Q  20 aatctccaaagtagccatgtcacatataatcataatacatcatcaaaata 69  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  23538953 aatctccaaagtagccatgtcacatat-atcataatacatcaccaaaata 23539001  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 16227689 - 16227794
Alignment:
Q  28 aagtagccatgtcacatataatcataatacatcatcaaaatataaaatctc-aatctcaacatagtgagaggtaaatctcataaa-tcataaacaaaata 125  Q
    |||||| |||| |||||||| ||||||||||||| |||||||   |||||| |||||||||||| |||| | ||||||||||||| ||||||| | |  |    
T  16227689 aagtagacatgccacatata-tcataatacatcaccaaaata---aatctccaatctcaacatactgagtgataaatctcataaagtcataaaaacataa 16227784  T
Q  126 acaacagaca 135  Q
    ||||||||||    
T  16227785 acaacagaca 16227794  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 21675582 - 21675640
Alignment:
Q  131 agacagacaccctaatcagagccggacactaagactcc-aaaacaagaaacgaggtagc 188  Q
    ||||||||||||||||||||| || ||||||||||||| ||| ||| | ||||||||||    
T  21675582 agacagacaccctaatcagagtcgcacactaagactccgaaagcaaaagacgaggtagc 21675640  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 17984664 - 17984607
Alignment:
Q  131 agacagacaccctaatcagagccggacactaagactccaaaacaagaaacgaggtagc 188  Q
    ||||||||| | |||||| |||| |||||| |||||||||||||| ||||||| ||||    
T  17984664 agacagacatcttaatcaaagcccgacactcagactccaaaacaaaaaacgagctagc 17984607  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 16166032 - 16165863
Alignment:
Q  20 aatctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctcaatctcaacatagtgagaggtaaa-tctcataaa-tcataa 117  Q
    ||||||||||||||||||| |||||||| ||||||||||||| ||||||| ||  ||  |||||||| | | || | | |||| |||||| |  ||||||    
T  16166032 aatctccaaagtagccatgccacatata-tcataatacatcaccaaaata-aatttccaaatctcaataaactgggtgataaaatctcatcatgtcataa 16165935  T
Q  118 acaaaataacaacagacagacaccctaatcagagccggacactaagactccaaaac-aagaaacgaggtagc 188  Q
    | | |  ||||| ||||| ||||||||| ||||||| ||||||||||||||||| | |||||||||||||||    
T  16165934 aaacataaacaatagacatacaccctaaacagagcccgacactaagactccaaagcaaagaaacgaggtagc 16165863  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 40355518 - 40355363
Alignment:
Q  20 aatctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctc-aatctcaacatagtgagagg-taaatctcataaa-tcata 116  Q
    ||||| |||||||| |||| |||||||  ||||||||||||| |||||||   |||||| |||||||||||| |||| |  ||||||||||||| |||||    
T  40355518 aatcttcaaagtagtcatgccacatatc-tcataatacatcaccaaaata---aatctccaatctcaacatattgagtgaataaatctcataaagtcata 40355423  T
Q  117 aaca--aaataacaacagacagacaccctaatcagagccgg--acactaagactccaaaa 172  Q
    ||    ||||||||||||||| ||| | ||||||||||| |  |||||||||||||||||    
T  40355422 aaatgtaaataacaacagacaaacatcataatcagagcccgacacactaagactccaaaa 40355363  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 38278720 - 38278667
Alignment:
Q  23 ctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctca 79  Q
    ||||||||||||||||||||  ||||||||| ||||||| | |||||||||||||||    
T  38278720 ctccaaagtagccatgtcac--ataatcatattacatca-ccaaatataaaatctca 38278667  T

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Target: scaffold0417 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 1793 - 1849
Alignment:
Q  132 gacagacaccctaatcagagccggacactaagactccaaaacaagaaacgaggtagc 188  Q
    |||||||| |||||| |||||| ||||||||||||||||| ||| ||||||| ||||    
T  1793 gacagacatcctaattagagcccgacactaagactccaaagcaaaaaacgagttagc 1849  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 19855864 - 19855792
Alignment:
Q  21 atctccaaagtagccatgtcacatataatcataatacatcatcaaa-atataaaatctcaatctcaacatagtgag 95  Q
    ||||| ||||||||||||||||  ||||||||| ||||||| |||| |||| ||||||||| ||||||||| ||||    
T  19855864 atctctaaagtagccatgtcac--ataatcatactacatcaccaaatatattaaatctcaa-ctcaacatactgag 19855792  T

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