View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7337_low_46 (Length: 405)

Name: NF7337_low_46
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7337_low_46
NF7337_low_46
[»] chr5 (17 HSPs)
chr5 (203-401)||(1849914-1850112)
chr5 (203-405)||(1163623-1163822)
chr5 (203-338)||(3299482-3299617)
chr5 (203-338)||(3392375-3392510)
chr5 (16-145)||(3299295-3299424)
chr5 (16-145)||(3392188-3392317)
chr5 (203-349)||(40418232-40418375)
chr5 (203-348)||(39879763-39879905)
chr5 (203-349)||(38987654-38987797)
chr5 (203-348)||(39726367-39726509)
chr5 (203-335)||(39168795-39168924)
chr5 (204-348)||(39399809-39399950)
chr5 (16-74)||(1163942-1164000)
chr5 (16-73)||(1849766-1849823)
chr5 (16-88)||(39168698-39168770)
chr5 (352-404)||(3299652-3299704)
chr5 (352-404)||(3392545-3392597)
[»] chr4 (3 HSPs)
chr4 (203-338)||(25912295-25912427)
chr4 (269-335)||(44444772-44444838)
chr4 (16-69)||(25912528-25912581)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 203 - 401
Target Start/End: Original strand, 1849914 - 1850112
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  1849914 caaaaaatatcgtttagctaatgccatagttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaggactcatcttagtcgtatt 1850013  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaatggtagagtt 401  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850014 ttaaaacctggtgaccatgctcttggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaatggtagagtt 1850112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 203 - 405
Target Start/End: Complemental strand, 1163822 - 1163623
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    ||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||    
T  1163822 caaaaaatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacac---ttttcaaatcaggactcatcttggtcgtatt 1163726  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaatggtagagttg 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163725 ttaaaacccggtgaccatgctcttggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaatggtagagttg 1163626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 203 - 338
Target Start/End: Original strand, 3299482 - 3299617
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299482 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 3299581  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctg 338  Q
    ||||||||||||||||||||||||||||||||||||    
T  3299582 ttaaaacccggtgaccatgctcttggttatgacctg 3299617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 203 - 338
Target Start/End: Original strand, 3392375 - 3392510
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392375 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 3392474  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctg 338  Q
    ||||||||||||||||||||||||||||||||||||    
T  3392475 ttaaaacccggtgaccatgctcttggttatgacctg 3392510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 3299295 - 3299424
Alignment:
Q  16 cacccttcactccttcattctctaggcctcagttagtggaatatgttgttcttggtattaacctcaaggaggaattagaggagttggtggaggagaataa 115  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3299295 cacccttcacgccttcattctctaggcctcagttagtggaatatgttgttctcggtattaacctcaaggaggaattagaggagttggtggaggagaataa 3299394  T
Q  116 agagaagaagaagctgattattgagttgta 145  Q
    ||||||||||||||||||||||||||||||    
T  3299395 agagaagaagaagctgattattgagttgta 3299424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 3392188 - 3392317
Alignment:
Q  16 cacccttcactccttcattctctaggcctcagttagtggaatatgttgttcttggtattaacctcaaggaggaattagaggagttggtggaggagaataa 115  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3392188 cacccttcacgccttcattctctaggcctcagttagtggaatatgttgttctcggtattaacctcaaggaggaattagaggagttggtggaggagaataa 3392287  T
Q  116 agagaagaagaagctgattattgagttgta 145  Q
    ||||||||||||||||||||||||||||||    
T  3392288 agagaagaagaagctgattattgagttgta 3392317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 203 - 349
Target Start/End: Original strand, 40418232 - 40418375
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    |||||||||| |||||||||||||  |||||||||||||||||||||||||||||||| |   ||||||||||||||||| |||||||||||||||||||    
T  40418232 caaaaaatattgtttagctgatgctgtggttgctcgtgtgaaagatattggaaataatga---cacaacttttcaaatcaggactcatcttggtcgtatt 40418328  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctgcctgaaggaga 349  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  40418329 ttaaaacccggtgaccatgctcttggttatgacctgtctggaggaga 40418375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 203 - 348
Target Start/End: Original strand, 39879763 - 39879905
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||| |   ||||||||||||||||| |||||||||||||||||||    
T  39879763 caaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga---cacaacttttcaaatcaggactcatcttggtcgtatt 39879859  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctgcctgaaggag 348  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||    
T  39879860 ttaaaacccggtgaccatgctcttggttatgacctgtctggaggag 39879905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 203 - 349
Target Start/End: Original strand, 38987654 - 38987797
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||| |   ||||||||||||||||| ||||||||| ||||||||     
T  38987654 caaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga---cacaacttttcaaatcaggactcatctcggtcgtatc 38987750  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctgcctgaaggaga 349  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  38987751 ttaaaacccggtgaccatgctcttggttatgacctgtctggaggaga 38987797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 203 - 348
Target Start/End: Original strand, 39726367 - 39726509
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||| |   ||||||||||||||||| ||||||||| ||||||||     
T  39726367 caaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga---cacaacttttcaaatcaggactcatctcggtcgtatc 39726463  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctgcctgaaggag 348  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||    
T  39726464 ttaaaacccggtgaccatgctcttggttatgacctgtctggaggag 39726509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 203 - 335
Target Start/End: Original strand, 39168795 - 39168924
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||| ||||||||||| |   |||||||||||||||||| |||||||| |||| ||||    
T  39168795 caaaaaatatcggttagctgatgccgtggttgctcgtgtggaagattttggaaataatga---cacaacttttcaaatcaaaactcatctaggtcatatt 39168891  T
Q  303 ttaaaacccggtgaccatgctcttggttatgac 335  Q
    |||||| |||||||| |||||||||||||||||    
T  39168892 ttaaaatccggtgactatgctcttggttatgac 39168924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 204 - 348
Target Start/End: Original strand, 39399809 - 39399950
Alignment:
Q  204 aaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattt 303  Q
    |||||||| ||||||||||||||| |||||||||||||| || || ||||||||||| |   ||||||||||||||||| |||||||||||||| |||||    
T  39399809 aaaaaataccgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataatga---cacaacttttcaaatcaggactcatcttggtcatattt 39399905  T
Q  304 taaaacccggtgaccatgctcttggttatgacctgcctgaaggag 348  Q
    ||||| |||||||| ||||||||||||||||| || ||| |||||    
T  39399906 taaaatccggtgactatgctcttggttatgacttgtctggaggag 39399950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 1164000 - 1163942
Alignment:
Q  16 cacccttcactccttcattctctaggcctcagttagtggaatatgttgttcttggtatt 74  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||    
T  1164000 cacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcggtatt 1163942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 1849766 - 1849823
Alignment:
Q  16 cacccttcactccttcattctctaggcctcagttagtggaatatgttgttcttggtat 73  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||    
T  1849766 cacccttcacgccttcattctctaggcatcagttagtggaatatgttgttctcggtat 1849823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 39168698 - 39168770
Alignment:
Q  16 cacccttcactccttcattctctaggcctcagttagtggaatatgttgttcttggtattaacctcaaggagga 88  Q
    |||||||||| | ||||||| ||||| ||||||||||| ||||||||||||||| ||||  |||| |||||||    
T  39168698 cacccttcacgcattcattcactaggactcagttagtgaaatatgttgttcttgatattgtcctccaggagga 39168770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 3299652 - 3299704
Alignment:
Q  352 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgtt 404  Q
    |||||||||| ||||| ||||||| |||  |||||||||||||||||||||||    
T  3299652 ccattttgatcaccaaaattagttatgccgaagaggagaatggtagagttgtt 3299704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 3392545 - 3392597
Alignment:
Q  352 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgtt 404  Q
    |||||||||| ||||| ||||||| |||  |||||||||||||||||||||||    
T  3392545 ccattttgatcaccaaaattagttatgccgaagaggagaatggtagagttgtt 3392597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 203 - 338
Target Start/End: Complemental strand, 25912427 - 25912295
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||||||||||| |   ||||||||||||||||| |||||||||||||||||||    
T  25912427 caaaaaatatcgtttagctgatgatgtggttgctcgtgtgaaagatattggaaataatga---cacaacttttcaaatcaggactcatcttggtcgtatt 25912331  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctg 338  Q
     ||||||||| |||||||||||||||||||||||||    
T  25912330 ctaaaacccgatgaccatgctcttggttatgacctg 25912295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 44444838 - 44444772
Alignment:
Q  269 aacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgaccatgctcttggttatgac 335  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  44444838 aacttttcaaatcaagactcatcttggtcgtattttaaaacctggtgactatgctcttggttatgac 44444772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 25912581 - 25912528
Alignment:
Q  16 cacccttcactccttcattctctaggcctcagttagtggaatatgttgttcttg 69  Q
    |||||||||| |||| |||| |||||||||||||||| |||||| |||||||||    
T  25912581 cacccttcacgccttaattcactaggcctcagttagttgaatatattgttcttg 25912528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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