View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7337_low_47 (Length: 404)

Name: NF7337_low_47
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7337_low_47
NF7337_low_47
[»] chr3 (13 HSPs)
chr3 (90-314)||(29703534-29703758)
chr3 (90-314)||(36950156-36950380)
chr3 (90-314)||(53282148-53282372)
chr3 (90-289)||(20104177-20104375)
chr3 (90-307)||(39833236-39833452)
chr3 (93-305)||(5232804-5233015)
chr3 (90-178)||(29833271-29833359)
chr3 (244-307)||(31658825-31658888)
chr3 (90-179)||(12938397-12938486)
chr3 (90-175)||(33216791-33216876)
chr3 (236-307)||(50650397-50650468)
chr3 (236-307)||(12938542-12938613)
chr3 (236-289)||(33216678-33216731)
[»] chr5 (12 HSPs)
chr5 (90-314)||(39884550-39884774)
chr5 (90-307)||(24788329-24788545)
chr5 (90-178)||(31482202-31482290)
chr5 (90-179)||(1828408-1828497)
chr5 (90-179)||(40313873-40313962)
chr5 (90-179)||(41413575-41413664)
chr5 (236-307)||(1828553-1828624)
chr5 (236-307)||(40314018-40314089)
chr5 (236-307)||(41413448-41413519)
chr5 (236-307)||(30625005-30625076)
chr5 (236-303)||(31482078-31482145)
chr5 (90-179)||(30624860-30624949)
[»] chr4 (12 HSPs)
chr4 (90-314)||(15531209-15531433)
chr4 (90-307)||(20133265-20133481)
chr4 (90-307)||(47031464-47031669)
chr4 (90-307)||(55919392-55919608)
chr4 (90-307)||(42069051-42069256)
chr4 (90-307)||(45989615-45989820)
chr4 (234-307)||(28679506-28679579)
chr4 (90-179)||(24228276-24228365)
chr4 (236-307)||(4919155-4919226)
chr4 (236-307)||(27293087-27293158)
chr4 (244-307)||(42976479-42976542)
chr4 (90-126)||(2708238-2708274)
[»] chr8 (4 HSPs)
chr8 (90-314)||(3879465-3879689)
chr8 (90-307)||(531539-531755)
chr8 (90-307)||(30945458-30945675)
chr8 (90-178)||(13802813-13802901)
[»] chr2 (10 HSPs)
chr2 (90-314)||(7089079-7089303)
chr2 (95-314)||(33755068-33755287)
chr2 (90-305)||(37078802-37079016)
chr2 (90-307)||(17690459-17690675)
chr2 (105-307)||(15330604-15330806)
chr2 (105-307)||(16429734-16429935)
chr2 (90-307)||(14810120-14810335)
chr2 (132-307)||(37261702-37261876)
chr2 (236-303)||(18977120-18977187)
chr2 (236-307)||(14096397-14096468)
[»] chr7 (8 HSPs)
chr7 (90-307)||(29243235-29243449)
chr7 (90-307)||(45972278-45972494)
chr7 (90-305)||(47327797-47328011)
chr7 (90-307)||(34093973-34094178)
chr7 (90-307)||(6442492-6442697)
chr7 (236-307)||(19436813-19436884)
chr7 (137-180)||(29258430-29258473)
chr7 (236-307)||(29833950-29834021)
[»] chr1 (8 HSPs)
chr1 (90-307)||(12981376-12981592)
chr1 (90-307)||(45348273-45348489)
chr1 (243-307)||(45325640-45325704)
chr1 (91-179)||(39241555-39241644)
chr1 (236-307)||(27286305-27286376)
chr1 (236-307)||(52385819-52385890)
chr1 (236-307)||(39241699-39241767)
chr1 (90-159)||(45325768-45325837)
[»] scaffold0166 (1 HSPs)
scaffold0166 (90-307)||(30712-30928)
[»] chr6 (5 HSPs)
chr6 (118-180)||(33694805-33694867)
chr6 (236-289)||(28138063-28138116)
chr6 (236-307)||(12938783-12938854)
chr6 (236-307)||(33694921-33694992)
chr6 (119-222)||(12466425-12466527)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 90 - 314
Target Start/End: Complemental strand, 29703758 - 29703534
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  29703758 gggagcttctacggagaagtcagaaaaatgactttttcggtgaagtcgtttgaatggaccaatcagatttcaagtgatgacacgtcggataccctgcatt 29703659  T
Q  190 atgttatagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggta 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29703658 atgttatagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttagtctctatgttattgtggta 29703559  T
Q  290 tactgtctacacatgattagtatca 314  Q
    ||||||||||||||||||| |||||    
T  29703558 tactgtctacacatgattaatatca 29703534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 90 - 314
Target Start/End: Complemental strand, 36950380 - 36950156
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||| | |||||||||||||| |||||||||||| |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  36950380 gggagcttctatgaagaagtcagaaaaacgactttttcggtgaagtcgtttgaatgggccaattagatttcaagtgatgacacgtcagataccctgcatt 36950281  T
Q  190 atgttatagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggta 289  Q
    |||||| |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36950280 atgttagagtgcaggcgttctacagtaccgtaagtagaaggaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggta 36950181  T
Q  290 tactgtctacacatgattagtatca 314  Q
    || ||||||||||||||||||||||    
T  36950180 tattgtctacacatgattagtatca 36950156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 90 - 314
Target Start/End: Original strand, 53282148 - 53282372
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||| | |||||||||||||||||||| |||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  53282148 gggagcttctatgaagaagtcagaaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagatttcaagtgatgacacgtcagataccctgcatt 53282247  T
Q  190 atgttatagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggta 289  Q
    ||||||| ||||||||||| |||||||||||||||| || |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  53282248 atgttattgtgcaggcggtctacagtaccgtaagtaaaaggaaaactttatttcattatcttaatggttagatttacttagtctctatgttattgtggta 53282347  T
Q  290 tactgtctacacatgattagtatca 314  Q
    |||||||||||||||||||||||||    
T  53282348 tactgtctacacatgattagtatca 53282372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 90 - 289
Target Start/End: Original strand, 20104177 - 20104375
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||||| ||||||||| ||||||||||||||||| || |||||||||| |  ||||||||||| |||||||||||||||||| | |||  ||     
T  20104177 gggagcttctacgaagaagtcaggaaaatgactttttcggtgaaatcgtttgaataggccaatcagattttaagtgatgacacgtcagaaatcct-aata 20104275  T
Q  190 atgttatagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggt 288  Q
    |||||| |||| || ||||| |||| |||||| |||| ||  ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  20104276 atgttacagtgtagtgcggtctacaataccgttagta-aagaaaaactttatttcatgatcttaatggttagatttacttgatctttatgttattgtggt 20104374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 90 - 307
Target Start/End: Complemental strand, 39833452 - 39833236
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||| |  |||||||| |||||||||| |||||| |||||||||||||||  ||||||||||| || ||||||||||||| | |||||  ||     
T  39833452 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaaaaacccta-atc 39833354  T
Q  190 atgttatagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggt 288  Q
    |||||  |||| || ||||| ||| ||| ||||||| ||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  39833353 atgtttcagtgtagtgcggtctacggtagcgtaagt-gaaggaaaactttatttcatgattttaatggttagatttacttgatctctatgttattgtggt 39833255  T
Q  289 atactgtctacacatgatt 307  Q
    | ||  |||||||||||||    
T  39833254 acaccatctacacatgatt 39833236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 93 - 305
Target Start/End: Original strand, 5232804 - 5233015
Alignment:
Q  93 agcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcattatg 192  Q
    |||||||||| ||||||||| |||||||||| |||||| ||||||| |||||||  ||||||||||| |||||||||||||||||| | | |  || |||    
T  5232804 agcttctacgaagaagtcaggaaaatgacttcttcggtgaagtcgtctgaatgggccaatcagattttaagtgatgacacgtcagagatctta-ataatg 5232902  T
Q  193 ttatagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtata 291  Q
    ||| |||| || ||||| |||| |||||||||| |||  |||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| |    
T  5232903 ttacagtgtagtgcggtctacaataccgtaagt-gaagaaaaactttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtaca 5233001  T
Q  292 ctgtctacacatga 305  Q
       |||||||||||    
T  5233002 acatctacacatga 5233015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 29833271 - 29833359
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcaga 178  Q
    ||||||||||||| ||||||||| |||||||||| || ||| |||||||||||||| | ||||||||||| ||||||||||||||||||    
T  29833271 gggagcttctacgaagaagtcagtaaaatgacttctttggtgaagtcgtttgaatgaaccaatcagattttaagtgatgacacgtcaga 29833359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 31658888 - 31658825
Alignment:
Q  244 atgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||  |||||||||||||    
T  31658888 atgatcttaacggttagatttacttggtctctatgttattgtggtacaccatctacacatgatt 31658825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 12938397 - 12938486
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagat 179  Q
    ||||||||||| |  |||||| |  ||||||||| |||||| |||||||||||||||| |||||||||||||||  ||||||||||||||    
T  12938397 gggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagat 12938486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 33216876 - 33216791
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtc 175  Q
    |||||||||||||  |||||||  |||||||||| |||||| ||||||||||||||   ||||||||||| |||||||||||||||    
T  33216876 gggagcttctacgatgaagtcattaaaatgacttcttcggtgaagtcgtttgaatgagccaatcagattttaagtgatgacacgtc 33216791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 50650468 - 50650397
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    ||||||||| |||||||| ||||||||||  ||||||||||||||||||||||| ||  |||||||||||||    
T  50650468 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatt 50650397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 12938542 - 12938613
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    ||||||||| |||||||| |||||| |||||||||| ||||||||||||||||| ||  | |||||||||||    
T  12938542 tttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatt 12938613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 33216731 - 33216678
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggta 289  Q
    |||| ||||||||||||||||||||||||  |||| ||||||| |||| |||||    
T  33216731 tttacttcatgatcttaatggttagatttgtttggcctctatggtattatggta 33216678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 90 - 314
Target Start/End: Original strand, 39884550 - 39884774
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  39884550 gggagtttctacggagaagtcagaaaaatgactttttcggtgaagtcgtttgaatggaccaatcagatttcaagtgatgacacgtcagataccatgcatt 39884649  T
Q  190 atgttatagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggta 289  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39884650 atgttacagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttagtctctatgttattgtggta 39884749  T
Q  290 tactgtctacacatgattagtatca 314  Q
    |||||||||||||| ||||||||||    
T  39884750 tactgtctacacataattagtatca 39884774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 90 - 307
Target Start/End: Complemental strand, 24788545 - 24788329
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||| |  |||||||| |||||||||| |||||| |||||||||||||||  ||||||||||| || ||||||||||||| | |||||  ||     
T  24788545 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaaaaacccta-atc 24788447  T
Q  190 atgttatagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggt 288  Q
    |||||  |||| || ||||| ||| ||| ||||||| ||| |||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||    
T  24788446 atgttccagtgtagtgcggtctacggtagcgtaagt-gaaggaaagctttattttatgattttaatggttagatttacttgatctctatgttattgtggt 24788348  T
Q  289 atactgtctacacatgatt 307  Q
    | ||  |||||||||||||    
T  24788347 acaccatctacacatgatt 24788329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 31482290 - 31482202
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcaga 178  Q
    ||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||   |||||| |||| |||||||||||| |||||    
T  31482290 gggagcttctacgaagaagtcagtaaaatgacttcttcggtaaagtcgtttgaatgagccaatcaaattttaagtgatgacacttcaga 31482202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 1828408 - 1828497
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagat 179  Q
    ||||||||||| |  |||||| |  ||||||||| |||||| |||||||||||||||| |||||||||||||||  ||||||||||||||    
T  1828408 gggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagat 1828497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 40313873 - 40313962
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagat 179  Q
    ||||||||||| |  |||||| |  ||||||||| |||||| |||||||||||||||| |||||||||||||||  ||||||||||||||    
T  40313873 gggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagat 40313962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 41413664 - 41413575
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagat 179  Q
    ||||||||||| |  |||||| |  ||||||||| |||||| |||||||||||||||| |||||||||||||||  ||||||||||||||    
T  41413664 gggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagat 41413575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 1828553 - 1828624
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    ||||||||| |||||||| |||||| |||||||||| ||||||||||||||||| ||  | |||||||||||    
T  1828553 tttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatt 1828624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 40314018 - 40314089
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    ||||||||| |||||||| |||||| |||||||||| ||||||||||||||||| ||  | |||||||||||    
T  40314018 tttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatt 40314089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 41413519 - 41413448
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    ||||||||| |||||||| |||||| |||||||||| ||||||||||||||||| ||  | |||||||||||    
T  41413519 tttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatt 41413448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 30625005 - 30625076
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    |||||||||  || |||| ||||||||||  ||||||||||||||||||||||| ||  |||||||||||||    
T  30625005 tttatttcaaaattttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatt 30625076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 31482145 - 31482078
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacat 303  Q
    |||| ||||||||||||||||||||||||  |||||||||||| |||| ||||| ||  |||||||||    
T  31482145 tttacttcatgatcttaatggttagatttgtttggtctctatggtattatggtacaccatctacacat 31482078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 30624860 - 30624949
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagat 179  Q
    ||||||||||| | |||||||   ||| |||||||||  || ||||||||| | |  | |||||||||||||||| ||||||||||||||    
T  30624860 gggagcttctatgaagaagtcgagaaattgacttttttagtgaagtcgtttaattcaaccaatcagatttcaagtcatgacacgtcagat 30624949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 90 - 314
Target Start/End: Complemental strand, 15531433 - 15531209
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||    
T  15531433 gggagcttctacggagaagtcagaaaaatgactttttcagtgaagtcgtttgaatgaaccaatcagatttcaagtgatgatacgtcagataccctgcatt 15531334  T
Q  190 atgttatagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggta 289  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15531333 atgttacagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttagtctctatgttattgtggta 15531234  T
Q  290 tactgtctacacatgattagtatca 314  Q
    ||||||||||||||||||| |||||    
T  15531233 tactgtctacacatgattattatca 15531209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 90 - 307
Target Start/End: Original strand, 20133265 - 20133481
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||| |  |||||||| |||||||||| |||||| |||||||||||||||  ||||||||||| || ||||||||||||| | |||||  ||     
T  20133265 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaaaaacccta-atc 20133363  T
Q  190 atgttatagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggt 288  Q
    |||||  |||| || ||||| ||| ||| ||||||| ||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  20133364 atgtttcagtgtagtgcggtctacggtagcgtaagt-gaaggaaaactttatttcatgattttaatggttagatttacttgatctctatgttattgtggt 20133462  T
Q  289 atactgtctacacatgatt 307  Q
    | ||  |||||||||||||    
T  20133463 acaccatctacacatgatt 20133481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 90 - 307
Target Start/End: Complemental strand, 47031669 - 47031464
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||||| ||||||||| |||||||||| ||||||  ||||||||||||||  ||||||||||| ||    |||||||||||| |  |||||||    
T  47031669 gggagcttctacgaagaagtcaggaaaatgacttcttcggtgcagtcgtttgaatgggccaatcagattttaaccattgacacgtcaga-aaactgcatt 47031571  T
Q  190 atgttatagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggta 289  Q
    |||||| |||| ||||||| ||||||||||||||||||| ||           ||||||||||||||||||||||| ||| |||||||||||||||||||    
T  47031570 atgttacagtgtaggcggtctacagtaccgtaagtagaagga-----------catgatcttaatggttagatttaattgatctctatgttattgtggta 47031482  T
Q  290 tactgtctacacatgatt 307  Q
    |||  |||||||||||||    
T  47031481 taccatctacacatgatt 47031464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 90 - 307
Target Start/End: Complemental strand, 55919608 - 55919392
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||| |  |||||||| |||||||||| |||||| |||||||||||||||  ||||||||||| || ||||||||| ||| | |||||  ||     
T  55919608 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacatcaaaaacccta-atc 55919510  T
Q  190 atgttatagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggt 288  Q
    |||||  |||| || ||||| ||| ||| ||||||| ||| ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  55919509 atgttccagtgtagtgcggtctacggtagcgtaagt-gaaggaaaactttatttcatgattttaatagttagatttacttgatctctatgttattgtggt 55919411  T
Q  289 atactgtctacacatgatt 307  Q
    | ||  |||||||||||||    
T  55919410 acaccatctacacatgatt 55919392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 90 - 307
Target Start/End: Complemental strand, 42069256 - 42069051
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||| | ||||||||| |||||||||| ||||||  |||||||||||||| |||||||||||| ||     ||||||||||| | | |||||     
T  42069256 gggagcttctatgaagaagtcaggaaaatgacttcttcggtgcagtcgtttgaatgggtcaatcagattttaatcctagacacgtcagaaaac-tgcatc 42069158  T
Q  190 atgttatagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggta 289  Q
    |||||| |||| ||||||| ||||||||||||||||||| ||           ||||||||||| ||||||||||| ||| |||||||||||||||||||    
T  42069157 atgttacagtgtaggcggtctacagtaccgtaagtagaagga-----------catgatcttaacggttagatttaattgatctctatgttattgtggta 42069069  T
Q  290 tactgtctacacatgatt 307  Q
    |||  |||||||||||||    
T  42069068 taccatctacacatgatt 42069051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 90 - 307
Target Start/End: Complemental strand, 45989820 - 45989615
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||||| ||||||||| |||||||||| || |||  ||||||||||||||  ||||||||||| ||      |||||||||| | | |||||     
T  45989820 gggagcttctacgaagaagtcaggaaaatgacttctttggtgcagtcgtttgaatgggccaatcagattttaatcctatacacgtcagaaaac-tgcatc 45989722  T
Q  190 atgttatagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggta 289  Q
    |||||| |||| ||||||| ||||||||||||||||||| ||           ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  45989721 atgttacagtgtaggcggtctacagtaccgtaagtagaagga-----------catgatcttaacggttagatttaattggtctctatgttattgtggta 45989633  T
Q  290 tactgtctacacatgatt 307  Q
    |||  |||||||||||||    
T  45989632 taccatctacacatgatt 45989615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 28679506 - 28679579
Alignment:
Q  234 actttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    ||||||||| ||||||||||| |||| ||||||||| ||||||||||||||||||||||  |||||||||||||    
T  28679506 actttattttatgatcttaatagttaaatttacttgatctctatgttattgtggtataccatctacacatgatt 28679579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 24228365 - 24228276
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagat 179  Q
    ||||||||||| |  |||||| |  ||||||||| |||||| |||||||||||||||| |||||||||||||||  ||||||||||||||    
T  24228365 gggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagat 24228276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 4919155 - 4919226
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    ||||||||| |||||||||||||||||||  |||||||||||| |||||||||| ||  |||||||||||||    
T  4919155 tttatttcaagatcttaatggttagatttgtttggtctctatgatattgtggtacacgctctacacatgatt 4919226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 27293087 - 27293158
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    ||||||||| |||||||| ||||||||||  ||||||||||||||||||||||| ||  |||||||||||||    
T  27293087 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatt 27293158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 42976479 - 42976542
Alignment:
Q  244 atgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||| ||  |||||||||||||    
T  42976479 atgatcttaacggttagatttacttggtctctatgttaatgtggtacaccatctacacatgatt 42976542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 2708274 - 2708238
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgacttttt 126  Q
    |||||||||||||| |||||||||||| |||||||||    
T  2708274 gggagcttctacggtgaagtcagaaaattgacttttt 2708238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 90 - 314
Target Start/End: Complemental strand, 3879689 - 3879465
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||   |||| ||||||||||||||||||||||||||||||||||||    
T  3879689 gggagcttctacgaagaagtcagaaaaacgactttttcggtgaagtcgtttgaatgagccaattagatttcaagtgatgacacgtcagataccctgcatt 3879590  T
Q  190 atgttatagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggta 289  Q
    ||||||  ||||||||||| |||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3879589 atgttagtgtgcaggcggtctacagtactgtaagtagaagaaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggta 3879490  T
Q  290 tactgtctacacatgattagtatca 314  Q
    || ||||||||||||||||||||||    
T  3879489 tattgtctacacatgattagtatca 3879465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 90 - 307
Target Start/End: Original strand, 531539 - 531755
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||| |  |||||||| |||||||||| |||||| |||||||||||||||  ||||||||||| || ||||||||||||| | |||||  ||     
T  531539 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaaaaacccta-atc 531637  T
Q  190 atgttatagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggt 288  Q
    |||||  |||| || ||||| ||| ||| ||||||| ||| |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||    
T  531638 atgttccagtgtagtgcggtctacggtagcgtaagt-gaaggaaaactttatttcataattttaatggttagatttacttgatctctatgttattgtggt 531736  T
Q  289 atactgtctacacatgatt 307  Q
    | ||  |||||||||||||    
T  531737 acaccatctacacatgatt 531755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 90 - 307
Target Start/End: Complemental strand, 30945675 - 30945458
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttc---ggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgc 186  Q
    ||||||||||| |  |||||||| |||||||||| |||   ||| ||||||||||||||| |||||||||||| || ||||||||||||||| |||||      
T  30945675 gggagcttctatgatgaagtcaggaaaatgacttcttcttcggtgaagtcgtttgaatgggtcaatcagattttaaatgatgacacgtcagaaacccta- 30945577  T
Q  187 attatgttatagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgt 285  Q
    || |||||  |||| || ||||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  30945576 atcatgttccagtgtagtgcggtctacggtagcgtaagt-gaatgaaaactttatttcatgatcttaatggttagatttacttgatctcta--ttattgt 30945480  T
Q  286 ggtatactgtctacacatgatt 307  Q
    |||| ||  |||||||||||||    
T  30945479 ggtacaccatctacacatgatt 30945458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 13802901 - 13802813
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcaga 178  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||    
T  13802901 gggagcttctacgaagaagtcagtaaaatgactttttcggtaaagtcgtttgaatgaaccaatcagattttaagtgatgacacgtcaga 13802813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 90 - 314
Target Start/End: Original strand, 7089079 - 7089303
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||| | |||||||||||||| |||||||||| | |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  7089079 gggagcttctatgaagaagtcagaaaaacgactttttcgatgaagtcgtttgaatgggccaattagatttcaagtgatgacacgtcagataccctgcatt 7089178  T
Q  190 atgttatagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggta 289  Q
    |||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7089179 atgttagagtgcaggcggtctacagtaccgtaagtagaaggaaaactttatttcatgatcttaatggttagatttacttgatctctatgttattgtggta 7089278  T
Q  290 tactgtctacacatgattagtatca 314  Q
    || ||| ||||||||||||||||||    
T  7089279 tattgtttacacatgattagtatca 7089303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 95 - 314
Target Start/End: Complemental strand, 33755287 - 33755068
Alignment:
Q  95 cttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcattatgtt 194  Q
    |||||| | |||||||||||||| |||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  33755287 cttctatgaagaagtcagaaaaacgactttttcggtgaagtcgtttgaatgggtcaattagatttcaagtgatgacacgtcagataccctgcattatgtt 33755188  T
Q  195 atagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactg 294  Q
    | |||||||||||| || ||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||    
T  33755187 agagtgcaggcggtctagagtaccgtaagtagaagaaaaactttatttcatgatattaatggttagatttacttggtctatatgttattgtggtatattg 33755088  T
Q  295 tctacacatgattagtatca 314  Q
    ||||||||||||||||||||    
T  33755087 tctacacatgattagtatca 33755068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 90 - 305
Target Start/End: Original strand, 37078802 - 37079016
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||||| ||||||||| |||||||||| |||||| ||||||| |||||||  ||||||||||| |||||||||||||||||| | | |  ||     
T  37078802 gggagcttctacgaagaagtcaggaaaatgacttcttcggtgaagtcgtctgaatgggccaatcagattttaagtgatgacacgtcagaaatctta-ata 37078900  T
Q  190 atgttatagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggt 288  Q
    |||||| |||| || ||||| |||| |||||||||| |||  |||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||    
T  37078901 atgttacagtgtagtgcggtctacaataccgtaagt-gaagaaaaactttatttcatgatcttaatagttagatttacttgatctttatgttattgtggt 37078999  T
Q  289 atactgtctacacatga 305  Q
    | |   |||||||||||    
T  37079000 acaacatctacacatga 37079016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 90 - 307
Target Start/End: Original strand, 17690459 - 17690675
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||| |  ||| |||| |||||||||| |||||| |||||||||||||||  ||||||||||| || ||||||||||||| | |||||  ||     
T  17690459 gggagcttctatgatgaactcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaaaaacccta-atc 17690557  T
Q  190 atgttatagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggt 288  Q
    |||||  |||| || ||||| ||| ||| ||||||| ||| ||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||    
T  17690558 atgttccagtgtagtgcggtctacggtagcgtaagt-gaaggaaaactttattttatgattttaatggttagatttacttgatctctatgttattgtggt 17690656  T
Q  289 atactgtctacacatgatt 307  Q
    | ||  |||||||||||||    
T  17690657 acaccatctacacatgatt 17690675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 105 - 307
Target Start/End: Original strand, 15330604 - 15330806
Alignment:
Q  105 gaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcag-atttcaagtgatgacacgtcagataccctgcattatgttatagtgcag 203  Q
    |||||||| |||||||||| |||||| |||||||||||||||  ||||||| |||| || ||||||||||||| | |||||  || |||||  |||| ||    
T  15330604 gaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagtattttaaatgatgacacgtcaaaaacccta-atcatgttccagtgtag 15330702  T
Q  204 -gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacaca 302  Q
     ||||| ||| ||| ||||||| ||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||  ||||||||    
T  15330703 tgcggtctacggtagcgtaagt-gaaggaaaactttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacaca 15330801  T
Q  303 tgatt 307  Q
    |||||    
T  15330802 tgatt 15330806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 105 - 307
Target Start/End: Original strand, 16429734 - 16429935
Alignment:
Q  105 gaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcattatgttatagtgcag- 203  Q
    |||||||| |||||||||| |||||| ||||||||||||| |  ||||||||||| || ||||||||||||| | |||||  || |||||  |||| ||     
T  16429734 gaagtcaggaaaatgacttcttcggtgaagtcgtttgaataggccaatcagattttaaatgatgacacgtcaaaaacccta-atcatgttccagtgtagt 16429832  T
Q  204 gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacat 303  Q
    | ||| ||| ||| ||||||| ||  ||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||  |||||||||    
T  16429833 gtggtctacggtagcgtaagt-gagggaaaactttatttcatgattttaatggttagatttacttgatctctatgttattatggtacaccatctacacat 16429931  T
Q  304 gatt 307  Q
    ||||    
T  16429932 gatt 16429935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 90 - 307
Target Start/End: Complemental strand, 14810335 - 14810120
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||| |  |||||||| |||||||||| || ||| | |||||||||||||  ||||||||||| || ||||||||||||| | |||||  ||     
T  14810335 gggagcttctatgatgaagtcaggaaaatgacttctttggtga-gtcgtttgaatgggccaatcagattttaaatgatgacacgtcaaaaacccta-atc 14810238  T
Q  190 atgttatagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggt 288  Q
    |||||  |||| || ||||| ||  ||| ||||||| ||| ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||    
T  14810237 atgttccagtgtagtgcggtctatggtagcgtaagt-gaaggaaaactttatttcatgattttaatggttagatttatttgatctctatgttattgtggt 14810139  T
Q  289 atactgtctacacatgatt 307  Q
    | ||  |||||||||||||    
T  14810138 acaccatctacacatgatt 14810120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 132 - 307
Target Start/End: Complemental strand, 37261876 - 37261702
Alignment:
Q  132 aagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcattatgttatagtgcag-gcggtttacagtaccgtaagtagaatg 230  Q
    ||||||||||||| |  ||||||||||| || ||||||||||||| | |||||  || |||||  |||| || ||||| ||| ||| ||||||| ||| |    
T  37261876 aagtcgtttgaataggccaatcagattttaaatgatgacacgtcaaaaacccta-atcatgttccagtgtagtgcggtctacggtagcgtaagt-gaagg 37261779  T
Q  231 aaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||  |||||||||||||    
T  37261778 aaaactttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatt 37261702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 18977187 - 18977120
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacat 303  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||||||||| ||  |||||||||    
T  18977187 tttatttcatgatcttaacagttagatttacttagtctctatgttattgtggtacaccatctacacat 18977120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 14096397 - 14096468
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    ||||||||| ||||||||  |||||||||  |||||||||||| |||||||||| ||  |||||||||||||    
T  14096397 tttatttcaagatcttaaccgttagatttgtttggtctctatgatattgtggtacacgctctacacatgatt 14096468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 6e-47; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 90 - 307
Target Start/End: Original strand, 29243235 - 29243449
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||| |  |||||||| |||||||||| |||||| ||||||||||||||| |||||||||||| || ||||||||||||||| |||||  ||     
T  29243235 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggtcaatcagattttaaatgatgacacgtcagaaacccta-atc 29243333  T
Q  190 atgttatagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggt 288  Q
    |||||  |||| || ||||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  29243334 atgttccagtgtagtgcggtctacggtagcgtaagt-gaatgaaaactttatttcatgatcttaatggttagatttacttgatctcta--ttattgtggt 29243430  T
Q  289 atactgtctacacatgatt 307  Q
    | ||  |||||||||||||    
T  29243431 acaccatctacacatgatt 29243449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 90 - 307
Target Start/End: Original strand, 45972278 - 45972494
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||| |  |||||||| |||||||||| |||||| |||||||||||||||  ||||||||||| || ||||||||||||| | |||||  ||     
T  45972278 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaaaaacccta-atc 45972376  T
Q  190 atgttatagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggt 288  Q
    ||||| ||||| || ||||| ||| ||| ||||||| ||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  45972377 atgttctagtgtagtgcggtctacggtagcgtaagt-gaaggaaaactttatttcatgattttaatggttagatttacttgatctctatgttattgtggt 45972475  T
Q  289 atactgtctacacatgatt 307  Q
    | ||  |||||||||||||    
T  45972476 acaccatctacacatgatt 45972494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 90 - 305
Target Start/End: Original strand, 47327797 - 47328011
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||||| ||||||||| |||||||||| |||||| ||||||| |||||||  ||||||||||| ||| |||||||||||||| | | |  ||     
T  47327797 gggagcttctacgaagaagtcaggaaaatgacttcttcggtgaagtcgtctgaatgggccaatcagattttaagcgatgacacgtcagaaatctta-ata 47327895  T
Q  190 atgttatagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggt 288  Q
    |||||| |||| || || || |||| ||| |||||| |||  |||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||    
T  47327896 atgttacagtgtagtgcagtctacaatactgtaagt-gaagaaaaactttatttcatgatcttaatagttagatttacttgatctttatgttattgtggt 47327994  T
Q  289 atactgtctacacatga 305  Q
    | |   |||||||||||    
T  47327995 acaacatctacacatga 47328011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 90 - 307
Target Start/End: Original strand, 34093973 - 34094178
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||||| |||||||||||||||||||| ||||||  ||||||||||||||  ||||||||||| ||     ||||||||||| |  ||||||     
T  34093973 gggagcttctacgaagaagtcagaaaaatgacttcttcggtgcagtcgtttgaatgggccaatcagattttaatcctagacacgtcaga-aaactgcatc 34094071  T
Q  190 atgttatagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggta 289  Q
    |||||| |||| ||||||| ||||||||||||||||||| ||           ||| ||||||| ||||||||||| ||| |||||||||||||||||||    
T  34094072 atgttacagtgtaggcggtctacagtaccgtaagtagaagga-----------cataatcttaacggttagatttaattgatctctatgttattgtggta 34094160  T
Q  290 tactgtctacacatgatt 307  Q
    |||  |||||||||||||    
T  34094161 taccatctacacatgatt 34094178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 90 - 307
Target Start/End: Original strand, 6442492 - 6442697
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||||| ||||||||| |||||||||| || |||  ||||||||||||||  ||||||||||| ||      |||||||||| | | |||||     
T  6442492 gggagcttctacgaagaagtcaggaaaatgacttctttggtgcagtcgtttgaatgggccaatcagattttaatcctatacacgtcagaaaac-tgcatc 6442590  T
Q  190 atgttatagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggta 289  Q
    |||||| |||| ||||||| ||||||||||||||||||| ||           |||||||||||  |||||||||| |||||||||||||||||||||||    
T  6442591 atgttacagtgtaggcggtctacagtaccgtaagtagaagga-----------catgatcttaactgttagatttaattggtctctatgttattgtggta 6442679  T
Q  290 tactgtctacacatgatt 307  Q
    |||  |||||||||||||    
T  6442680 taccatctacacatgatt 6442697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 19436813 - 19436884
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    ||||||||| ||||||||  |||||||||  ||||||||||||||||||||||| ||  | |||||||||||    
T  19436813 tttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggtacaccctatacacatgatt 19436884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 29258430 - 29258473
Alignment:
Q  137 gtttgaatggatcaatcagatttcaagtgatgacacgtcagata 180  Q
    ||||||||||  ||||||||||||||||||||||||||||||||    
T  29258430 gtttgaatgggccaatcagatttcaagtgatgacacgtcagata 29258473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 29834021 - 29833950
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    ||||||||| ||||||||  |||||||||  ||||||||||||||||||||||| ||  ||| |||||||||    
T  29834021 tttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggtaaaccctctgcacatgatt 29833950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 90 - 307
Target Start/End: Original strand, 12981376 - 12981592
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||| |  |||||||| |||||||||| |||||| |||||||||||||||  ||||||||||| || ||||||||||||| | |||||  ||     
T  12981376 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaaaaacccta-atc 12981474  T
Q  190 atgttatagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggt 288  Q
    |||||  |||| || ||||| ||| ||| ||||||| ||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  12981475 atgttccagtgtagtgcggtctacggtagcgtaagt-gaaggaaaactttatttcatgattttaatggttagatttacttgatctctatgttattgtggt 12981573  T
Q  289 atactgtctacacatgatt 307  Q
    | ||  |||||||||||||    
T  12981574 acaccatctacacatgatt 12981592  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 90 - 307
Target Start/End: Complemental strand, 45348489 - 45348273
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||| |  |||||||| ||||||| || |||||| ||||||||||||| | |||||||||||| || ||||||||||||| | |||||  ||     
T  45348489 gggagcttctatgatgaagtcaggaaaatgatttcttcggtgaagtcgtttgaataggtcaatcagattttaaatgatgacacgtcaaaaacccta-atc 45348391  T
Q  190 atgttatagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggt 288  Q
    |||||  |||| || ||||| ||| ||| ||||||| ||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  45348390 atgttccagtgtagtgcggtctacggtagcgtaagt-gaaggaaaactttatttcatgattttaatggttagatttacttgatctctatgttattgtggt 45348292  T
Q  289 atactgtctacacatgatt 307  Q
    | ||  |||||||||||||    
T  45348291 acaccatctacacatgatt 45348273  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 45325704 - 45325640
Alignment:
Q  243 catgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    ||||||||||| ||||||||||| || |||||||||||||||||||||||  |||||||||||||    
T  45325704 catgatcttaacggttagatttaattagtctctatgttattgtggtataccatctacacatgatt 45325640  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 39241555 - 39241644
Alignment:
Q  91 ggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaat-ggatcaatcagatttcaagtgatgacacgtcagat 179  Q
    |||||||||| | |||||| || |||||||||| |||| | ||||||||||||| || |||||||||||| ||||||| |||||||||||    
T  39241555 ggagcttctatgaagaagttaggaaaatgacttcttcgatgaagtcgtttgaatggggtcaatcagattttaagtgataacacgtcagat 39241644  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 27286305 - 27286376
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    |||||||||  ||||||| ||||||||||  ||||||||||||||||||||||| ||  |||||||||||||    
T  27286305 tttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatt 27286376  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 52385890 - 52385819
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    ||||||||| |||||| | ||||||||||  ||| ||||||||||||||||||| ||  |||||||||||||    
T  52385890 tttatttcaagatctttacggttagatttgtttgatctctatgttattgtggtacaccctctacacatgatt 52385819  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 39241699 - 39241767
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    |||||||||||||||||| |||||||||||| ||   ||| ||||||||||||| ||  |||||||||||||    
T  39241699 tttatttcatgatcttaacggttagatttacctg---tctttgttattgtggtacaccatctacacatgatt 39241767  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 45325837 - 45325768
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagattt 159  Q
    |||||||| |||  ||||||||| |||||||||| ||| ||  ||||||||||||||  |||||||||||    
T  45325837 gggagcttatacaaagaagtcaggaaaatgacttcttcagtgcagtcgtttgaatgggccaatcagattt 45325768  T

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Target: scaffold0166 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 90 - 307
Target Start/End: Complemental strand, 30928 - 30712
Alignment:
Q  90 gggagcttctacggagaagtcagaaaaatgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcatt 189  Q
    ||||||||||| |  |||||||| |||||||||| |||||| |||||||||||||||  ||||||||||| || ||||||||||||| | |||||  ||     
T  30928 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaaaaacccta-atc 30830  T
Q  190 atgttatagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttacttggtctctatgttattgtggt 288  Q
    |||||  |||| || ||||| ||| ||| ||||||| ||| |||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||    
T  30829 atgttccagtgtagtgcggtctacggtagcgtaagt-gaaggaaagctttattttatgattttaatggttagatttacttgatctctatgttattgtggt 30731  T
Q  289 atactgtctacacatgatt 307  Q
    | ||  |||||||||||||    
T  30730 acaccatctacacatgatt 30712  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 33694805 - 33694867
Alignment:
Q  118 tgactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagata 180  Q
    ||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||| |||||    
T  33694805 tgactttttcggtgaagtcgtttgaatggaccaatcagattttaagtgatgacacgttagata 33694867  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 28138116 - 28138063
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggta 289  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  28138116 tttatttcatgatcttaaaggttagatttacttggtctctatattattgtggta 28138063  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 12938783 - 12938854
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    |||||||||  ||||||| ||||||||||  ||||||||||||||||||||||| ||  |||||||||||||    
T  12938783 tttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatt 12938854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 33694921 - 33694992
Alignment:
Q  236 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatactgtctacacatgatt 307  Q
    ||||||||||||||||||  |||||||||| |||| |||||| ||||||||||| ||  |||||| ||||||    
T  33694921 tttatttcatgatcttaacagttagatttatttggcctctatattattgtggtacaccctctacatatgatt 33694992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 12466425 - 12466527
Alignment:
Q  119 gactttttcggtaaagtcgtttgaatggatcaatcagatttcaagtgatgacacgtcagataccctgcattatgttatagtgcaggcggtttacagtacc 218  Q
    ||||||||||||  |||||||| | |  | |||||| ||||||||| || ||||||| |||||| | ||| ||||||||||| ||||||| |||| ||||    
T  12466425 gactttttcggtgcagtcgtttaattcaaccaatcaaatttcaagtcataacacgtcggatacc-tacatcatgttatagtgtaggcggtctacaatacc 12466523  T
Q  219 gtaa 222  Q
    ||||    
T  12466524 gtaa 12466527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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