View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_48 (Length: 399)
Name: NF7337_low_48
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 9657853 - 9658220
Alignment:
| Q |
19 |
ccaactgtagcaaatactataaattaacttcatgcacatttcatatctaagttaagtttttaacattttaattttctttagcttaaataccaagtaatgt |
118 |
Q |
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| T |
9657853 |
ccaactgtagcaaatactataaattaacttcatgcacatttcatatgtaagttaagtttttaccattttaattttctttagcttaaataccaagtaatgt |
9657952 |
T |
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| Q |
119 |
atatgtagcgaaaattgtttaataaccaagccaaacccgtgcatgcgtatcaaatatannnnnnnnctcctttatgagtaactgcatgcatgatccaaat |
218 |
Q |
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| T |
9657953 |
atatgtagcgaaaattgtttaataaccaagccaaacccgtgcatgcgtatcaaatat--tttttttctcctttatgagtaactgcatgcatgatccaaat |
9658050 |
T |
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| Q |
219 |
ttgtttgtaatgaatggagtagtttcaacctttatatatgcgtatcaatgcatgctttctaaaatacctcgtctgaattgtacaaacaactgagctgaca |
318 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9658051 |
ttgtttgtaatgaatggagtagtttcaacctttatgtatgcgtatcaatgcatgctttctaaaatacctcgtctggattgtacaaacaactgagctgaca |
9658150 |
T |
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| Q |
319 |
gaatatatgttaaccgaatttgaggcacaatcatggataatacattgtacaaacattgtcgacataaaag |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9658151 |
gaatatatgttaaccgaatttgaggcacaatcatggataatacattgtacaaacattgtcgacataaaag |
9658220 |
T |
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