View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_5 (Length: 701)
Name: NF7337_low_5
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 455
Target Start/End: Original strand, 46552385 - 46552821
Alignment:
| Q |
19 |
gttggtgttaatttatgaaaaattaattatacctatcctcattttaaaaaactggactcctttttggaaacttttgtggttctacatgaatgaacggttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46552385 |
gttggtgttaatttatgaaaaattaattatacctatcctcattttaaaaaactggactcctttttggaaacttttgtggttctacatgaatgaatagttc |
46552484 |
T |
|
| Q |
119 |
tataaacatgcttttaatatacctgtattttcctcattaaaagctaacctagcaacaatttgatgtctcaggttatgagcttttttgcaacagctgaaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46552485 |
tataaacatgcttttaatatacctgtattttcctcattaaaagctaacctagcaacaatttgatgtctcaggttatgagcttttttgcaacagctgaaca |
46552584 |
T |
|
| Q |
219 |
tgagaaggaaagacttcagtatttttcctcacctgaaggaagagatgacctgtaccaatacaaccagaaggagaggagaactgttcttgaggtgaggtca |
318 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46552585 |
tgagaaggaaagacttcagtatttttcttcacctgaaggaagagatgacctgtaccaatacaaccagaaggagaggagaactgttcttgaggtgaggtca |
46552684 |
T |
|
| Q |
319 |
attaattgtgcattattttgctttgaatcaattcactagttttttatgcattgaagtctttatctaactgattttggactcttttcttactaagatgtta |
418 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46552685 |
atcaattgtgcattattttgctttgaatcaattcactagttttttatgcattgaagtctttatctaactgattttggactcttttcttactaagatgtta |
46552784 |
T |
|
| Q |
419 |
agcaacttcgtactttgtagaaaatatttatgatata |
455 |
Q |
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| T |
46552785 |
agcaacttcgtactttgtagaaaatatttatgatata |
46552821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 451 - 694
Target Start/End: Original strand, 46552855 - 46553098
Alignment:
| Q |
451 |
atatattttgaagccataatttgtgacattctatgcttgttttcttgcttgtttagatagtccttgattatatgctttcattttcttgtcagtttcatta |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46552855 |
atatattttgaagccataatttgtgacattctatgcttgttttcttgcttgtttagatagtccttgattatatgctttcattttcttgtcagtttcatta |
46552954 |
T |
|
| Q |
551 |
aatcaatttcatgcatatatttgttttattttttgcggtaaaaaaggtgctcaaagattttccttctgttcaaatgccacttgagtggctaatccaattg |
650 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46552955 |
aatcaatttcatgcatatatttgttttattttttgcggtaaaaaaggtgctcgaagattttccttctgttcaaatgccacttgagtggctaatccaattg |
46553054 |
T |
|
| Q |
651 |
gttcctatgctgaaaacaagagcattctctatttcttcttctca |
694 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46553055 |
gttcctatgctgaaaacaagagcattctctatttcttcttctca |
46553098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 100 - 463
Target Start/End: Original strand, 1028872 - 1029235
Alignment:
| Q |
100 |
ctacatgaatgaacggttctataaacatgcttttaatatacctgtattttcctcattaaaagctaacctagcaacaatttgatgtctcaggttatgagct |
199 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1028872 |
ctacatgaatgaagagttctataaacatgcttttaatatacctgtattttcctcattaaaagctaacttagcaacaatttgatgtctcaggttatgagct |
1028971 |
T |
|
| Q |
200 |
tttttgcaacagctgaacatgagaaggaaagacttcagtatttttcctcacctgaaggaagagatgacctgtaccaatacaaccagaaggagaggagaac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1028972 |
tttttgcaacagctgaacatgagaaggaaagacttcagtatttttcttcacctgaaggaagagatgacctgtaccaatacaaccagaaggagaggagaac |
1029071 |
T |
|
| Q |
300 |
tgttcttgaggtgaggtcaattaattgtgcattattttgctttgaatcaattcactagttttttatgcattgaagtctttatctaactgattttggactc |
399 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1029072 |
tgttcttgaggtgaggtcaatcaattgtgcattattttgctttgaatcaattcactagttttttatgcattgaagtctttatctaactgattttggactc |
1029171 |
T |
|
| Q |
400 |
ttttcttactaagatgttaagcaacttcgtactttgtagaaaatatttatgatatattttgaag |
463 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
1029172 |
ttttcttactaagatgttaagcaacttcaaactttgtagaaaatatttatgatatattttgaag |
1029235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 451 - 694
Target Start/End: Original strand, 1029274 - 1029518
Alignment:
| Q |
451 |
atatattttgaagccataatttgtgacattctatgcttgttttcttgcttgtttagatagtccttgattatat-gctttcattttcttgtcagtttcatt |
549 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1029274 |
atatattttgaagccataatctgtgacattctatgctcgttttcttgcttgtttagatagtccttgattatattgctttcattttcttgtcagtttcatt |
1029373 |
T |
|
| Q |
550 |
aaatcaatttcatgcatatatttgttttattttttgcggtaaaaaaggtgctcaaagattttccttctgttcaaatgccacttgagtggctaatccaatt |
649 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1029374 |
aaatcaattttatgcatatatttgttttattttttgcggtaaaaaaggtgctcgaagattttccttctgttcaaatgccacttgagtggctaatccaatt |
1029473 |
T |
|
| Q |
650 |
ggttcctatgctgaaaacaagagcattctctatttcttcttctca |
694 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1029474 |
ggttcctatgctgaaaacaagagcattctctatttcttcttctca |
1029518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 21 - 320
Target Start/End: Original strand, 40831514 - 40831809
Alignment:
| Q |
21 |
tggtgttaatttatgaaaaattaattatacctatcctcattttaaaaaactggactcctttttgga-aacttttgtggttctacatgaatgaacggttct |
119 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| || ||||||||||| ||||||||| | |||||||||||| ||||||| || ||||| |
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| T |
40831514 |
tggtgttaatttatgaaaaacctattata-----cctcattctagaaaactggactactttttggattagttttgtggttctgcatgaataaaaagttct |
40831608 |
T |
|
| Q |
120 |
ataaacatgcttttaatatacctgtattttcctcattaaaagctaacctagcaacaatttgatgtctcaggttatgagcttttttgcaacagctgaacat |
219 |
Q |
| |
|
|||||||| | |||||||| ||| || ||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
40831609 |
ataaacatccgtttaatattcctttaacttcgtcattaaaagctaacttagcaaaaatttgatgtctcaggttatgaggttttttgcaacagctgaacat |
40831708 |
T |
|
| Q |
220 |
gagaaggaaagacttcagtatttttcctcacctgaaggaagagatgacctgtaccaatacaaccagaaggagaggagaactgttcttgaggtgaggtcaa |
319 |
Q |
| |
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|||| |||||||||| |||||||| | |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
40831709 |
gagagggaaagacttgagtattttgcttcacctgaaggaagagatgatctgtaccaatacaaccagaaagagaggagaactgttcttgaggtgaggtcaa |
40831808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 491 - 694
Target Start/End: Original strand, 40831833 - 40832037
Alignment:
| Q |
491 |
tttcttgcttgtttagatagtccttgattatatgctttcattttcttgtcagtttcattaaatcaatttcatgcatatatttgttttattttttgcggt- |
589 |
Q |
| |
|
||||||| |||||||||| || |||||||||||||||||||||||| | || ||||||||||||||| ||||||||| |||| | |||||| ||| |
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|
| T |
40831833 |
tttcttgtctgtttagatattcgttgattatatgctttcattttcttctttgtatcattaaatcaattttatgcatatacatgttctgtttttttgggtt |
40831932 |
T |
|
| Q |
590 |
aaaaaaggtgctcaaagattttccttctgttcaaatgccacttgagtggctaatccaattggttcctatgctgaaaacaagagcattctctatttcttct |
689 |
Q |
| |
|
||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| || |||||| |
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| T |
40831933 |
aaaaaaggtactgaaggattttccttctgtacaaatgccacttgagtggctaatccaattggttcctatgctaaaaaagagagaattctccatatcttct |
40832032 |
T |
|
| Q |
690 |
tctca |
694 |
Q |
| |
|
||||| |
|
|
| T |
40832033 |
tctca |
40832037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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