View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7337_low_55 (Length: 345)

Name: NF7337_low_55
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7337_low_55
NF7337_low_55
[»] chr5 (11 HSPs)
chr5 (151-334)||(3300024-3300215)
chr5 (151-334)||(3392917-3393108)
chr5 (137-270)||(1163164-1163302)
chr5 (1-79)||(3299887-3299965)
chr5 (1-79)||(3392780-3392858)
chr5 (1-79)||(1163360-1163438)
chr5 (151-205)||(1850390-1850444)
chr5 (262-311)||(39880491-39880540)
chr5 (162-198)||(38988246-38988282)
chr5 (162-198)||(39880369-39880405)
chr5 (162-198)||(40418824-40418860)
[»] chr4 (4 HSPs)
chr4 (263-304)||(25911657-25911698)
chr4 (1-70)||(44444435-44444504)
chr4 (162-198)||(25911785-25911821)
chr4 (1-61)||(25911951-25912011)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 151 - 334
Target Start/End: Original strand, 3300024 - 3300215
Alignment:
Q  151 acttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcgg 250  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300024 acttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcgg 3300123  T
Q  251 catataaagta--------catttcacctcacccttccatttactttcctgtcttccatgtgttgcactcaaacatggctagttttacttct 334  Q
    |||||||||||        ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300124 catataaagtacctttcaccatttcacctcaccctttcatttactttcctgtcttccatgtgttgcactcaaacatggctagttttacttct 3300215  T

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Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 151 - 334
Target Start/End: Original strand, 3392917 - 3393108
Alignment:
Q  151 acttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcgg 250  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392917 acttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcgg 3393016  T
Q  251 catataaagta--------catttcacctcacccttccatttactttcctgtcttccatgtgttgcactcaaacatggctagttttacttct 334  Q
    |||||||||||        ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3393017 catataaagtacctttcaccatttcacctcaccctttcatttactttcctgtcttccatgtgttgcactcaaacatggctagttttacttct 3393108  T

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Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 137 - 270
Target Start/End: Complemental strand, 1163302 - 1163164
Alignment:
Q  137 cgataacaagaacaacttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgt---------gtgcttcccaaacca 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  1163302 cgataacaagaacaacttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgttgatcgtgcttcccaaacca 1163203  T
Q  228 tgcatgtcattaattatattcggcatataaagtacatttcacc 270  Q
    ||| ||||    ||||||||||||||||||||| | |||||||    
T  1163202 tgcctgtc----attatattcggcatataaagttcctttcacc 1163164  T

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Target: chr5; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 3299887 - 3299965
Alignment:
Q  1 atgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgc 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299887 atgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgc 3299965  T

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Target: chr5; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 3392780 - 3392858
Alignment:
Q  1 atgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgc 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392780 atgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgc 3392858  T

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Target: chr5; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 1163438 - 1163360
Alignment:
Q  1 atgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgc 79  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1163438 atgatctacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacaaaaacaaggaagatgc 1163360  T

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Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 1850390 - 1850444
Alignment:
Q  151 acttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaa 205  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1850390 acttactttgttgcaatttacaatttctgtttgatatttatgtttattagaacaa 1850444  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 39880491 - 39880540
Alignment:
Q  262 catttcacctcacccttccatttactttcctgtcttccatgtgttgcact 311  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  39880491 catttcacctcaccctaccatttactttcctgtcttccatatgttgcact 39880540  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 38988246 - 38988282
Alignment:
Q  162 tgcaatttgcaatttctgtttgatatttatgtttatt 198  Q
    |||| ||||||||||||||||||||||||||||||||    
T  38988246 tgcagtttgcaatttctgtttgatatttatgtttatt 38988282  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 39880369 - 39880405
Alignment:
Q  162 tgcaatttgcaatttctgtttgatatttatgtttatt 198  Q
    |||| ||||||||||||||||||||||||||||||||    
T  39880369 tgcagtttgcaatttctgtttgatatttatgtttatt 39880405  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 40418824 - 40418860
Alignment:
Q  162 tgcaatttgcaatttctgtttgatatttatgtttatt 198  Q
    |||| ||||||||||||||||||||||||||||||||    
T  40418824 tgcagtttgcaatttctgtttgatatttatgtttatt 40418860  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 25911698 - 25911657
Alignment:
Q  263 atttcacctcacccttccatttactttcctgtcttccatgtg 304  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  25911698 atttcacctcaccctaccatttactttcctgtcttccatgtg 25911657  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 44444504 - 44444435
Alignment:
Q  1 atgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaa 70  Q
    |||||| | ||||||||||||||||| ||||||| | |||||||||||||   ||||||||| |||||||    
T  44444504 atgatctagttacaagcttaaacaaaaatcacttttgttgatgttttgtttactccaataacgaaaacaa 44444435  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 25911821 - 25911785
Alignment:
Q  162 tgcaatttgcaatttctgtttgatatttatgtttatt 198  Q
    |||| |||||||||||||||||||| |||||||||||    
T  25911821 tgcagtttgcaatttctgtttgatacttatgtttatt 25911785  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 25912011 - 25911951
Alignment:
Q  1 atgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa 61  Q
    |||||| | |||| |||||||||||| ||||||| | |||||||||||||  |||||||||    
T  25912011 atgatctagttactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataa 25911951  T

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