View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_59 (Length: 312)
Name: NF7337_low_59
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 73 - 301
Target Start/End: Original strand, 22234032 - 22234258
Alignment:
| Q |
73 |
tttattttatggatatcatgcattagttcatccattggtctctatgttttgaattctaaatttttctttgttttcatgtagataagtatatcaaacttat |
172 |
Q |
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| T |
22234032 |
tttattttatggacatcatgcattagttcatccattggtctctatgttttgaattctaaatttttctttgttttcatgtagataagtatattaaacttat |
22234131 |
T |
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| Q |
173 |
ttatcattaaccagaaataatgatcagttttttgaaataaactcctttcatcaaatgcaagtgcaacccaattttattcattcaatgaaaatatattaaa |
272 |
Q |
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||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22234132 |
ttatcattaaccagaaacaatgatcaatttgttgaaataaactcctttcatcaaatgcaagtgcaacccaattttattcattcaatgaaa--atattaaa |
22234229 |
T |
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| Q |
273 |
agttttatgaaaataaaaatacatgaaac |
301 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
22234230 |
agttttatgaaaataaaaatacatgaaac |
22234258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 73 - 301
Target Start/End: Complemental strand, 22252707 - 22252481
Alignment:
| Q |
73 |
tttattttatggatatcatgcattagttcatccattggtctctatgttttgaattctaaatttttctttgttttcatgtagataagtatatcaaacttat |
172 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22252707 |
tttattttatggacatcatgcattagttcatccattggtctctatgttttgaattctaaatttttctttgttttcatgtagataagtatattaaacttat |
22252608 |
T |
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| Q |
173 |
ttatcattaaccagaaataatgatcagttttttgaaataaactcctttcatcaaatgcaagtgcaacccaattttattcattcaatgaaaatatattaaa |
272 |
Q |
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| T |
22252607 |
ttatcattaaccagaaacaatgatcaatttgttgaaataaactcctttcatcaaatgcaagtgcaacccaattttattcattcaatgaaa--atattaaa |
22252510 |
T |
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| Q |
273 |
agttttatgaaaataaaaatacatgaaac |
301 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
22252509 |
agttttatgaaaataaaaatacatgaaac |
22252481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 22233564 - 22233619
Alignment:
| Q |
11 |
atatatttaagaaagtaattttcaggtaaaaatattgttttcgacaaatttcaggt |
66 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
22233564 |
atatatttaagaaagtaatttttaggtacaaatattgttttcgacaaatttcaggt |
22233619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 22253175 - 22253120
Alignment:
| Q |
11 |
atatatttaagaaagtaattttcaggtaaaaatattgttttcgacaaatttcaggt |
66 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
22253175 |
atatatttaagaaagtaatttttaggtacaaatattgttttcgacaaatttcaggt |
22253120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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