View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7337_low_6 (Length: 678)

Name: NF7337_low_6
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7337_low_6
NF7337_low_6
[»] chr1 (7 HSPs)
chr1 (9-660)||(33301839-33302488)
chr1 (498-662)||(33250233-33250397)
chr1 (498-662)||(33270405-33270569)
chr1 (525-658)||(33310144-33310277)
chr1 (17-91)||(33250465-33250539)
chr1 (17-91)||(33270637-33270711)
chr1 (21-92)||(33310361-33310432)
[»] chr7 (2 HSPs)
chr7 (296-391)||(21148660-21148755)
chr7 (290-373)||(34726588-34726671)
[»] chr2 (3 HSPs)
chr2 (284-478)||(2419882-2420076)
chr2 (355-478)||(42510694-42510818)
chr2 (180-264)||(41513823-41513910)
[»] chr8 (2 HSPs)
chr8 (317-478)||(13054306-13054464)
chr8 (421-470)||(11567574-11567623)
[»] chr6 (1 HSPs)
chr6 (415-470)||(5550798-5550853)
[»] chr4 (1 HSPs)
chr4 (283-369)||(34069128-34069214)
[»] chr3 (2 HSPs)
chr3 (420-478)||(15801460-15801518)
chr3 (317-405)||(40192019-40192108)


Alignment Details
Target: chr1 (Bit Score: 608; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 9 - 660
Target Start/End: Complemental strand, 33302488 - 33301839
Alignment:
Q  9 acatcatactcaaaagccttatagaattgagctagttggtgtcgtttgtgatggttatcatgcagttattagaggcattaggtatgattcaactataata 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33302488 acatcatactcaaaagccttatagaattgagctagttggtgtcgtttgtgatggttatcatgcagttattagaggcattaggtatgattcaactataata 33302389  T
Q  109 atatactttggtagtgtgttttttggtttgattaaatatgcattttactatttggaattataaggcttgatcaatttaatccctcatatttgcaaattaa 208  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  33302388 gtatactttggtagtgtgttttttggtttgattaaatatgcattttactatttggaattataaggcttgatca-tttaatccctcatatttgcaaaataa 33302290  T
Q  209 cattttagtcccttaaattgaaaaacaatcaatctactccctccatcaaaatatttatatagtaaagaacaatagaagacgtacatattgacttaagtag 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  33302289 cattttagtcccttaaattgaaaaacaatcaatctactccctccatcaaaatatttatatagtaaagaacaatagaagacgtaagtattgacttaagtag 33302190  T
Q  309 tattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgactaaatcggttgatatttttaaattcaaggactaaa 408  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  33302189 tattttcctgcatcaaaacaagcatagaatctttaaaattctgatacaaaattatagaaaatgactaaatcggttgatatttttaaattcaaggactaaa 33302090  T
Q  409 atgttattttaaaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaatacctatttcctctcttgtgtatgatatagttaacattt 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33302089 atgttattttaaaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaatacctatttcctctcttgtgtatgatatagttaaca-tt 33301991  T
Q  509 tcctattggaattttaacaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaatgcatttccaa 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33301990 tcctattggaattttaacaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaatgcatttccaa 33301891  T
Q  609 gatattgcaaacttgttgataatgccagactctattgcacaaatgatgttgg 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33301890 gatattgcaaacttgttgataatgccagactctattgcacaaatgatgttgg 33301839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 498 - 662
Target Start/End: Complemental strand, 33250397 - 33250233
Alignment:
Q  498 agttaacattttcctattggaattttaacaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaa 597  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  33250397 agttaacattttccttttggaattttaacaggagagctattatgacagggagggcagtgagggtgaattcacagttgcaatctcacaaaagatttgctaa 33250298  T
Q  598 tgcatttccaagatattgcaaacttgttgataatgccagactctattgcacaaatgatgttggtg 662  Q
    ||||||||||| ||| |||||||||||||| | ||| || |||||||||||| ||| ||||||||    
T  33250297 tgcatttccaaaatactgcaaacttgttgacagtgctaggctctattgcacagatgctgttggtg 33250233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 498 - 662
Target Start/End: Complemental strand, 33270569 - 33270405
Alignment:
Q  498 agttaacattttcctattggaattttaacaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaa 597  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  33270569 agttaacattttccttttggaattttaacaggagagctattatgacagggagggcagtgagggtgaattcacagttgcaatctcacaaaagatttgctaa 33270470  T
Q  598 tgcatttccaagatattgcaaacttgttgataatgccagactctattgcacaaatgatgttggtg 662  Q
    ||||||||||| ||| |||||||||||||| | ||| || |||||||||||| ||| ||||||||    
T  33270469 tgcatttccaaaatactgcaaacttgttgacagtgctaggctctattgcacagatgctgttggtg 33270405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 525 - 658
Target Start/End: Complemental strand, 33310277 - 33310144
Alignment:
Q  525 acaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaatgcatttccaagatattgcaaacttgt 624  Q
    ||||||||||||| |||||||  |||||||| |||||||| |||||| || |||| |||||||||||||||||||||||||||| ||||||| |||||||    
T  33310277 acaggagagctatcatgacaaaaagggcagtaagggtgaaatcacaactggaatctcacaaaagatttgctaatgcatttccaaaatattgcgaacttgt 33310178  T
Q  625 tgataatgccagactctattgcacaaatgatgtt 658  Q
    ||| | ||| || || |||| ||||| |||||||    
T  33310177 tgacagtgctaggctatattacacaagtgatgtt 33310144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 33250539 - 33250465
Alignment:
Q  17 ctcaaaagccttatagaattgagctagttggtgtcgtttgtgatggttatcatgcagttattagaggcattaggt 91  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  33250539 ctcaaaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttattagaggcattaggt 33250465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 33270711 - 33270637
Alignment:
Q  17 ctcaaaagccttatagaattgagctagttggtgtcgtttgtgatggttatcatgcagttattagaggcattaggt 91  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  33270711 ctcaaaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttattagaggcattaggt 33270637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 33310432 - 33310361
Alignment:
Q  21 aaagccttatagaattgagctagttggtgtcgtttgtgatggttatcatgcagttattagaggcattaggta 92  Q
    ||||||||| ||||||| |||||||||||| ||||||||||| |||| ||| ||| ||||||||||||||||    
T  33310432 aaagccttacagaattgtgctagttggtgtggtttgtgatggctatcttgctgttgttagaggcattaggta 33310361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 296 - 391
Target Start/End: Original strand, 21148660 - 21148755
Alignment:
Q  296 ttgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgactaaatcggttgatatttt 391  Q
    ||||||||| |||| |||||||| |||||||||| |||| || |||||||||| ||||| | || |||| ||||||||||||| | ||||||||||    
T  21148660 ttgacttaaatagtgttttcttgaatcaaaacaaacataaaacctttaaaattgtgataaagaaattgataaaatgactaaattgattgatatttt 21148755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 290 - 373
Target Start/End: Complemental strand, 34726671 - 34726588
Alignment:
Q  290 tacatattgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgac 373  Q
    ||||||||||||||| |||| ||||  ||||||||||||||||||||| |||| |||||  |||  ||||||||| ||||||||    
T  34726671 tacatattgacttaaatagtcttttgctgcatcaaaacaagcatagaaccttttaaattgagatggaaaatttgaaaaaatgac 34726588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 284 - 478
Target Start/End: Original strand, 2419882 - 2420076
Alignment:
Q  284 aagacgtacatattgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgactaaatcggtt 383  Q
    ||||| ||||||| || |||| |||| |||| |||||||||||||||  || || ||||||| || || | |||||||||| |||| |||||||| | ||    
T  2419882 aagacatacatatagaattaaatagtcttttgttgcatcaaaacaagtgtaaaacctttaaa-ttgtggtgcaaaatttgaaaaaaagactaaattgatt 2419980  T
Q  384 gatatttttaaattcaag-gactaaaatgttattttaaaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaatacctattt 478  Q
    |||||||||||||| ||| ||||||| || ||||| | |||||||||  ||| | || || ||   ||||| |||| | |||||||||||||||||    
T  2419981 gatatttttaaatttaagagactaaattgctatttcacaaatttgaggaactgagttaactgattgttacaatttctaggactaaaatacctattt 2420076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 478
Target Start/End: Complemental strand, 42510818 - 42510694
Alignment:
Q  355 caaaatttgagaaaatgactaaatcggttgatatttttaaattcaagg-actaaaatgttattttaaaaatttgagcgactaaattgaccgacctttaca 453  Q
    |||||||||| ||| ||||||||| | |||| |||||| |||| |||| |||||| |  |||||   | |||| |  |||||||||||||||||||||||    
T  42510818 caaaatttgaaaaattgactaaattgtttgacatttttcaatttaagggactaaactcctatttcgcagatttcaaggactaaattgaccgacctttaca 42510719  T
Q  454 ttttcaaagactaaaatacctattt 478  Q
     |||||| ||||||||| |||||||    
T  42510718 atttcaaggactaaaatgcctattt 42510694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 264
Target Start/End: Original strand, 41513823 - 41513910
Alignment:
Q  180 caatttaatccctcatatttgcaaattaacattttagtcccttaaattgaaaaa---caatcaatctactccctccatcaaaatattt 264  Q
    ||||||| ||| ||| ||||||||| || ||  |||||||||||||||||||||   |||||||| || || ||||||||||||||||    
T  41513823 caatttagtccttcaaatttgcaaaatagcaagttagtcccttaaattgaaaaatatcaatcaatttagtctctccatcaaaatattt 41513910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 478
Target Start/End: Complemental strand, 13054464 - 13054306
Alignment:
Q  317 tgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgactaaatcggttgatatttttaaattcaaggactaaaatgttatt 416  Q
    |||||||||| |||||||||| |||||||||| ||  | ||||||| | ||||||||||||  | ||||||||||| |||| ||  |||||| || ||||    
T  13054464 tgcatcaaaataagcatagaacctttaaaattgtgggataaaatttaa-aaaatgactaaaatgtttgatatttttcaatttaa--actaaattgctatt 13054368  T
Q  417 ttaaaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaatacctattt 478  Q
    | | | ||||||| |||||||||||||| || ||  | |||||| || |||||| |||||||    
T  13054367 tcacatatttgagggactaaattgaccggcccttgaaatttcaacgaataaaatgcctattt 13054306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 421 - 470
Target Start/End: Complemental strand, 11567623 - 11567574
Alignment:
Q  421 aaatttgagcgactaaattgaccgacctttacattttcaaagactaaaat 470  Q
    ||||||||| ||||||||||||||||| ||||| |||||| |||||||||    
T  11567623 aaatttgagggactaaattgaccgacccttacaatttcaaggactaaaat 11567574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 415 - 470
Target Start/End: Original strand, 5550798 - 5550853
Alignment:
Q  415 ttttaaaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaat 470  Q
    |||| |||||||||| || ||||||||| |||| ||||| ||||||||||||||||    
T  5550798 ttttgaaaatttgagggattaaattgacagacccttacaatttcaaagactaaaat 5550853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 283 - 369
Target Start/End: Original strand, 34069128 - 34069214
Alignment:
Q  283 gaagacgtacatattgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaa 369  Q
    |||||||||||||| ||||||| ||||  ||| |||||||||||||| | ||   | ||||||||| || |||||||||||| ||||    
T  34069128 gaagacgtacatatcgacttaaatagttctttgttgcatcaaaacaaacctaatctgtttaaaattgtggtacaaaatttgaaaaaa 34069214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 420 - 478
Target Start/End: Complemental strand, 15801518 - 15801460
Alignment:
Q  420 aaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaatacctattt 478  Q
    |||||||||| || | |||||||||||| ||||| ||| ||||||||||||| ||||||    
T  15801518 aaaatttgagggattgaattgaccgaccgttacaatttgaaagactaaaatatctattt 15801460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 405
Target Start/End: Original strand, 40192019 - 40192108
Alignment:
Q  317 tgcatcaaaacaagcatagaatctttaaaattc-tgatacaaaatttgagaaaatgactaaatcggttgatatttttaaattcaaggact 405  Q
    ||||||||||| | ||||||| ||||||||||  || | | || ||||||||||||| ||||| | ||||||||||| |||| |||||||    
T  40192019 tgcatcaaaaccaacatagaacctttaaaatttatggtgcgaagtttgagaaaatgattaaattgattgatatttttcaatttaaggact 40192108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University