View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7337_low_60 (Length: 307)
Name: NF7337_low_60
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_60 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 7450576 - 7450879
Alignment:
| Q |
1 |
atgtgcttaagccagtggtagtttaattacggaatgaattattatcacttaccagtgtcaatttattaagggactaaa------------tcaagtagca |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7450576 |
atgtgcttaagccagtggtagtttaattacggaatgaattattatcacttaccagtgtcaatttattaagggactaaaaaattaattaaatcaagtagca |
7450675 |
T |
|
| Q |
89 |
agaatctttgattattctatacaagcctctcgaagatactgacttagctgtggagatttgttgcttttatatgggcaataattaattcaaccttttgatg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7450676 |
agaatctttgattattctatacaagcctctcgaagatactgacttagctgtggagatttgttgcttttatatggggaataattaattcaaccttttgatg |
7450775 |
T |
|
| Q |
189 |
aaagggactagcttaggctttgtcttccaatggaaagctcgtctcttttcttgatggctttttcttcacattatttttccaactagctactagtacttgt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7450776 |
aaagggactagcttaggctttgtcttccaatggaaagctcgtctcttttcttgatggctttttcttcacattatttttccaactagctactagtacttgt |
7450875 |
T |
|
| Q |
289 |
gtat |
292 |
Q |
| |
|
|||| |
|
|
| T |
7450876 |
gtat |
7450879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 7436755 - 7436794
Alignment:
| Q |
181 |
ttttgatgaaagggactagcttaggctttgtcttccaatg |
220 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7436755 |
tttttatgaaagggactagctttggctttgtcttccaatg |
7436794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University