View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_61 (Length: 305)
Name: NF7337_low_61
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 45 - 293
Target Start/End: Complemental strand, 37793697 - 37793455
Alignment:
| Q |
45 |
ttcaaatgaaattattagtattatctacatggcatggcattttcaaaagagtaaaccaccacattactgtaacaatttattctgcagtatggctccaaaa |
144 |
Q |
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| T |
37793697 |
ttcaaatgaaattattagtattat------ggcatgtcattttcaaaagagtaaaccaccacattactgtaacaatttattctgcagtatggctccaaaa |
37793604 |
T |
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| Q |
145 |
ttctacatcgtacacagaactaaagtattcatgttcacactctgcaggaaataatgcatccattaaaggattttcatgtgatattgtggaagtaacattt |
244 |
Q |
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| T |
37793603 |
ttctacatcgtacacagaactaaagtattcatgttcacactctgcaggaaataatgcatccattaaaggattttcatgtgatattgtggaagtaacattt |
37793504 |
T |
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| Q |
245 |
tccattgttattgaagagaatccatttgatgatggttgtgaagatactg |
293 |
Q |
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| T |
37793503 |
tccattgttattgaagagaatccatttgatgatggttgtgaagatactg |
37793455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 181
Target Start/End: Complemental strand, 37809655 - 37809559
Alignment:
| Q |
82 |
cattttcaaaagagtaaaccaccacattactgtaacaatttattctgcagtatggctccaaaattctacatcgtacacagaactaaagtattcatgttca |
181 |
Q |
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| T |
37809655 |
cattttcaaaagagtatacccccacattacagtaacgatttattttcca---tggctccaaagttctgcatcgtatacaggactaaagtattcatgttca |
37809559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 37793780 - 37793742
Alignment:
| Q |
13 |
aatatagaagcgagaaagaaatgctattttatttcaaat |
51 |
Q |
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| T |
37793780 |
aatatagaagcgagaaagaaatgctattttatttcaaat |
37793742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 37793066 - 37792990
Alignment:
| Q |
214 |
attttcatgtgatattgtggaagtaacattttccattgttattgaagagaatccatttgatgatggttgtgaagata |
290 |
Q |
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| T |
37793066 |
attttcatgtgatatagtggaagcgaaattttctgttgttatgcaagagaatccacttgaaaatggttgtgaagata |
37792990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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