View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7337_low_62 (Length: 299)

Name: NF7337_low_62
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7337_low_62
NF7337_low_62
[»] chr3 (1 HSPs)
chr3 (13-299)||(2654890-2655176)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 2654890 - 2655176
Alignment:
Q  13 aatattcacactgatccattcaatgagttgatataattttccaaacactttatgtaaaccatatataatctagtgagacctgatggattaaaccataatc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2654890 aatattcacactgatccattcaatgagttgatataattttccaaacactttatgtaaaccatatataatctagtgagacctgatggattaaaccataatc 2654989  T
Q  113 tagtaatagtttcnnnnnnnaatgtttcatactcattagaaacttccttacaattgaacaccagagagaatttgaacatcttaatgattctgcaccaaaa 212  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2654990 tagtaatagtttctttttttaatgtttcatactcattagaaacttccttacaattgaacaccagagagaatttgaacatcttaattattctgcaccaaaa 2655089  T
Q  213 gcagaaccattcaatgccccttcctcaactaaatatatgtaaataagaaaactcacgaagaaaataagagaaccatttttcaggaaa 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2655090 gcagaaccattcaatgccccttcctcaactaaatatatgtaaataagaaaactcacgaagaaaataagagaaccatttttcaggaaa 2655176  T

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