View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_65 (Length: 292)
Name: NF7337_low_65
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 62 - 281
Target Start/End: Complemental strand, 3782013 - 3781794
Alignment:
| Q |
62 |
agcaatcacattaatataatgtgtacacatactaaataacaaatctaattaaacagtcaacaatgatcaaatcaattgcatcaacatgttgttttccatg |
161 |
Q |
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| T |
3782013 |
agcaatcacattaatataatgtgtacacatactaaataacaaatctaattaaacagtcaacagtgatcaaatcaattgcatcaacatgttgttttccatg |
3781914 |
T |
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| Q |
162 |
caagcactttaccaccgactccgagtttgtttcgatcacaatgttgctcgtttaaccactgagttcaccatctcaatcctaccgcttctgccatgagaac |
261 |
Q |
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| T |
3781913 |
caagcactttaccaccgactccgagtttgtttcgatcacaatgttgctcgtttaaccactgagttcaccatctcaatcctaccgcttctgccatgagaac |
3781814 |
T |
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| Q |
262 |
agacagacctgtgttttcat |
281 |
Q |
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| T |
3781813 |
agacagacctgtgttttcat |
3781794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 3782074 - 3782044
Alignment:
| Q |
1 |
gttctgggttgacaataaggccataaacaac |
31 |
Q |
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| T |
3782074 |
gttctgggttgacaataaggccataaacaac |
3782044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 45505749 - 45505713
Alignment:
| Q |
130 |
aaatcaattgcatcaacatgttgttttccatgcaagc |
166 |
Q |
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| T |
45505749 |
aaatcaattgcatcagcatgttgttttccaagcaagc |
45505713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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