View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_75 (Length: 257)
Name: NF7337_low_75
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_75 |
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| [»] scaffold0638 (1 HSPs) |
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| [»] scaffold0451 (1 HSPs) |
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Alignment Details
Target: scaffold0638 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 4895 - 5114
Alignment:
| Q |
21 |
gagcttgacctattcatcaagtttatgaaagaagcagccaatgatggaacaatggttgatataactgccaaggtttctacactcactgctgatatgactt |
120 |
Q |
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| T |
4895 |
gagcttgacctattgatcaagtttatgaaagaagcagccaatgatggaacaacggttgatataagtgccaaggtttctacactcactgctgatatgactt |
4994 |
T |
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| Q |
121 |
gtagaatggtttttgggaagaattatttggacaagggcttgtatgagaagggattcaaggctgtagtgcaagagctaatgaatttagcagcaactcctaa |
220 |
Q |
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| T |
4995 |
gtagaatggtttttgggaagaattatttggacaagggcttgtatgagaagggattcaaggctgtagtgcaagagctaatgaatttagcagcaactcctaa |
5094 |
T |
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| Q |
221 |
catttctgattatattcctt |
240 |
Q |
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|||||||||||||||||||| |
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| T |
5095 |
catttctgattatattcctt |
5114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 27412092 - 27412317
Alignment:
| Q |
15 |
gaacaagagcttgacctattcatcaagtttatgaaagaagcagccaatgatggaacaatggttgatataactgccaaggtttctacactcactgctgata |
114 |
Q |
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| T |
27412092 |
gaacaagagcttgacctattgatcaagtttataagagaagcagccaatgatggaacaacggttgatataagtgccaaggttgctgcacttacagctgata |
27412191 |
T |
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| Q |
115 |
tgacttgtagaatggtttttgggaagaattatttggacaagggcttgtatgagaagggattcaaggctgtagtgcaagagctaatgaatttagcagcaac |
214 |
Q |
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| T |
27412192 |
tgacttgcataatagtttttgggaaaaagtattcggacaaggatttgaatgagaagggattcaaggcttcgatgcaagagttaatgagtttagcagcaac |
27412291 |
T |
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| Q |
215 |
tcctaacatttctgattatattcctt |
240 |
Q |
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| T |
27412292 |
tcctaacattgctgattttattcctt |
27412317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 8590 - 8365
Alignment:
| Q |
15 |
gaacaagagcttgacctattcatcaagtttatgaaagaagcagccaatgatggaacaatggttgatataactgccaaggtttctacactcactgctgata |
114 |
Q |
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| T |
8590 |
gaacaagagcttgacctattgatcaagtttataagagaagcagccaatgatggaacaacggttgatataagtgccaaggttgctgcacttacagttgata |
8491 |
T |
|
| Q |
115 |
tgacttgtagaatggtttttgggaagaattatttggacaagggcttgtatgagaagggattcaaggctgtagtgcaagagctaatgaatttagcagcaac |
214 |
Q |
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| T |
8490 |
tgacttgcataatagtttttgggaaaaagtattcggacaaggatttgaatgagaagggattcaaggcttcgatgtaagagttaatgagtttagcagcaac |
8391 |
T |
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| Q |
215 |
tcctaacatttctgattatattcctt |
240 |
Q |
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|||||||||| |||||| |||||||| |
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| T |
8390 |
tcctaacattgctgattttattcctt |
8365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 240
Target Start/End: Original strand, 38262097 - 38262277
Alignment:
| Q |
60 |
aatgatggaacaatggttgatataactgccaaggtttctacactcactgctgatatgacttgtagaatggtttttgggaagaattatttggacaagggct |
159 |
Q |
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||||| ||||||| ||||||| ||| ||| || |||||||||||| | |||||||||| ||||||||||||||| ||||| || ||| | || |||| | |
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| T |
38262097 |
aatgacggaacaaaggttgatttaagtgctaaagtttctacactcgcggctgatatgagttgtagaatggttttagggaaaaagtatatagataaggatt |
38262196 |
T |
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| Q |
160 |
tgtatgagaagggattcaaggctgtagtgcaagagctaatgaatttagcagcaactcctaacatttctgattatattcctt |
240 |
Q |
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| T |
38262197 |
tggatgagaaagggtttaaggctgttatgcaagagggaatgcatttagcagctactcctaatattggtgattatattcctt |
38262277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 38258302 - 38258527
Alignment:
| Q |
15 |
gaacaagagcttgacctattcatcaagtttatgaaagaagcagccaatgatggaacaatggttgatataactgccaaggtttctacactcactgctgata |
114 |
Q |
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|||||||| ||||||||||| || |||||| | | |||| |||||||| |||||| ||||||| ||| ||||||||||||||||||||||||||| |
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| T |
38258302 |
gaacaagaacttgacctattgataaagtttttaagagaaaagaccaatgatagaacaaaggttgatttaagcaccaaggtttctacactcactgctgata |
38258401 |
T |
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| Q |
115 |
tgacttgtagaatggtttttgggaagaattatttggacaagggcttgtatgagaagggattcaaggctgtagtgcaagagctaatgaatttagcagcaac |
214 |
Q |
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||| ||||||||||||||| ||||| || ||| ||| | | ||| ||||||| || || |||||||| ||| |||| |||| ||||| | ||||| |
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| T |
38258402 |
tgagttgtagaatggttttggggaaaaaatatacggatgatgatttggatgagaaagggtttaaggctgtgatgctagagacaatgcatttatctgcaac |
38258501 |
T |
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| Q |
215 |
tcctaacatttctgattatattcctt |
240 |
Q |
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|||||| ||| |||||| ||||||| |
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| T |
38258502 |
tcctaatattggtgattagattcctt |
38258527 |
T |
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