View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_76 (Length: 254)
Name: NF7337_low_76
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_76 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 59 - 224
Target Start/End: Complemental strand, 28506787 - 28506622
Alignment:
| Q |
59 |
ttttattataatggttattcacatgctgttagaactaaagagattgataagccgagagtttcaatgattttgatgataatacacttattctaagtgaata |
158 |
Q |
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| T |
28506787 |
ttttattattatggttattcaaatgctgttagaactaaagagattgataagccgatagtttcaatgattttgatgataatacacttattctaagtgaata |
28506688 |
T |
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| Q |
159 |
agttatcctttgccattcaacaaagttatttcaagtgtggagatttaagttttcgtgtaaatgatt |
224 |
Q |
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| T |
28506687 |
agttatcctttcccattcaacaaagttatttcaagtgtggagatttaagttttggtgtaaatgatt |
28506622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 76 - 224
Target Start/End: Complemental strand, 28494276 - 28494128
Alignment:
| Q |
76 |
ttcacatgctgttagaactaaagagattgataagccgagagtttcaatgattttgatgataatacacttattctaagtgaataagttatcctttgccatt |
175 |
Q |
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| T |
28494276 |
ttcacatattgttagaagtaaagagattggtaagccaagactttcaatgattttgatgatagcacacggattgttagggaatatgttatggtttgctatt |
28494177 |
T |
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| Q |
176 |
caacaaagttatttcaagtgtggagatttaagttttcgtgtaaatgatt |
224 |
Q |
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| T |
28494176 |
cagcaaagttatttcaagagtggacttttaaattttcgtgtgaatgatt |
28494128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28506911 - 28506853
Alignment:
| Q |
1 |
cactgattgtgatgtcgactatgattgatgctaccaccttataagtgtacctttctccttt |
61 |
Q |
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| T |
28506911 |
cactgattgtgatgtcgactatgattgatgctaccaccttataa--gtacctttctccttt |
28506853 |
T |
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