View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_78 (Length: 252)
Name: NF7337_low_78
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_78 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 43555344 - 43555562
Alignment:
| Q |
16 |
atcactcttagatatttttgcaattaattaatcatgcttactttatcataacattactacaattattattcatcgattttgattacttatagtgactgta |
115 |
Q |
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| T |
43555344 |
atcactcttagatatttttgcaattaattaatcatgcttactttatcataacattactacaattattattcatcgattttgattact-atagcgactgta |
43555442 |
T |
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| Q |
116 |
attatattcttaaggataaggtattctcgcatcaaattcatcattcttgcagttatataatgtgacttagacattgttttacattctcatgaccatggcc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43555443 |
attatattcttaaggataaggtattctcgcatcaaattcatcattcttgcagttatattatgtgacttagacattgttttacattctcatgaccatggcc |
43555542 |
T |
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| Q |
216 |
catttcctctagaagcatac |
235 |
Q |
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|||||||||||||||||||| |
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| T |
43555543 |
catttcctctagaagcatac |
43555562 |
T |
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