View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_79 (Length: 250)
Name: NF7337_low_79
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_79 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 19054542 - 19054362
Alignment:
| Q |
19 |
agtacacctataggaacaatgtctccaaacaccaccaattgaatcagtggcttcaaaaacaatagggttgtagtgtgatagttgttttgctacggctatg |
118 |
Q |
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| T |
19054542 |
agtacacctataggaacaatgtctccaaacaccaccaattgaatcagtggcttcaaaaacaatagggttgtagtgtgatagttgttttgctacggctaag |
19054443 |
T |
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| Q |
119 |
ccactaactccagcacctatgataccaattcttgacaccataattggtgggttgtctttagttggcatagggttgtagtag |
199 |
Q |
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| T |
19054442 |
ccactaactccagcacctatgataccaattcttgacactatacttggtgggttgtctttagtcggcatagggttgtagtag |
19054362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 19192252 - 19192430
Alignment:
| Q |
19 |
agtacacctataggaacaatgtctccaaacaccaccaattgaatcagtggcttcaaaaacaatagggttgtagtgtgatagttgttttgctacggctatg |
118 |
Q |
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| T |
19192252 |
agtacacctataggaacaatgtctccaaacaccaccaatggagttagtggcttcaaaaacaatagggttgtagtgtgatagttgttttgctacggctaaa |
19192351 |
T |
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| Q |
119 |
ccactaactccagcacctatgataccaattcttgacaccataattggtgggttgtctttagttggcatagggttgtagt |
197 |
Q |
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| T |
19192352 |
ccactcactccagcacctatgatgccaattctagacactataattggtaagttgccttgagtggccatagggctgtagt |
19192430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 6898740 - 6898886
Alignment:
| Q |
30 |
aggaacaatgtctccaaacaccaccaattgaatcagtggcttcaaaaacaatagggttgtagtgtgatagttgttttgctacggctatgccactaactcc |
129 |
Q |
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| T |
6898740 |
aggaacaatgtctccaaacacccccaattgaatcagtggcttcaaaaacaattgggttatagtgtgatagttgtttgactacggctaaaccactcactcc |
6898839 |
T |
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| Q |
130 |
agcacctatgataccaattcttgacaccataattggtgggttgtctt |
176 |
Q |
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| T |
6898840 |
agcacctatgatgccaattctagataccataattggtaggttgtctt |
6898886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 51731488 - 51731568
Alignment:
| Q |
50 |
ccaccaattgaatcagtggcttcaaaaacaatagggttgtagtgtgatagttgttttgctacggctatgccactaactcca |
130 |
Q |
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| T |
51731488 |
ccaccaatggagtcagtggcttcaaatacaataggattgtggtgtaatagctgttttgcaattgctatgccacttactcca |
51731568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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