View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7337_low_83 (Length: 248)
Name: NF7337_low_83
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_83 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 5440576 - 5440344
Alignment:
| Q |
17 |
aaaagcaagtataaatgattttataaaattatccttcattaataatatgagaaaatgatgatttagtctaaaattacttgaacaaaataccatcaaagac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
5440576 |
aaaagcaagtataaatgattttataaaattatccttcattaatgatacgagaaaatgatgatttaatccaaaattacttgaacaaaataccatcaaagac |
5440477 |
T |
|
| Q |
117 |
caatggaggaatactgagaggtatattggtctcattatccaaatcgatttagtcca-aaaatgtgagcaattttaagaggtatattgtaaaaccataggg |
215 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
5440476 |
caatggaggaatattgagaggtatactggtctcattatccaaatcgatttagtccaaaaaatgtgagcaattttaagagatatattgtacaaccataggg |
5440377 |
T |
|
| Q |
216 |
ttggaaaagaaacaatcaatgtttaatgaaatt |
248 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
5440376 |
ttggaaaagaaacagtcaatgtttaatgaaatt |
5440344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 38223668 - 38223713
Alignment:
| Q |
26 |
tataaatgattttataaaattatccttcattaataatatgagaaaa |
71 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
38223668 |
tataaattattttacaaaattatccttcattaatgatatgagaaaa |
38223713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 5461709 - 5461680
Alignment:
| Q |
34 |
attttataaaattatccttcattaataata |
63 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5461709 |
attttataaaattatccttcattaataata |
5461680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 21652849 - 21652890
Alignment:
| Q |
30 |
aatgattttataaaattatccttcattaataatatgagaaaa |
71 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
21652849 |
aatgattttacaaaattatcctttattaataatatgagaaaa |
21652890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 24346359 - 24346321
Alignment:
| Q |
26 |
tataaatgattttataaaattatccttcattaataatat |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
24346359 |
tataaatgattttataaaattatccttcataaatgatat |
24346321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 27003286 - 27003238
Alignment:
| Q |
23 |
aagtataaatgattttataaaattatccttcattaataatatgagaaaa |
71 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
27003286 |
aagtataaataattttataaaattatcgttcattaattatacgagaaaa |
27003238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 34708193 - 34708148
Alignment:
| Q |
26 |
tataaatgattttataaaattatccttcattaataatatgagaaaa |
71 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
34708193 |
tataaatgattttataaaattattgttcattaattatacgagaaaa |
34708148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 3875827 - 3875791
Alignment:
| Q |
34 |
attttataaaattatccttcattaataatatgagaaa |
70 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
3875827 |
attttacaaaattatccttcattaatgatatgagaaa |
3875791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University